RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SLC35F4A4IF30 521 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 SPINT1O43278 529 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 NBPF14Q5TI25 921 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 Q6ZVU0 165 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 VASH1Q7L8A9 365 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-206ENST00000550611 SH3BP5LQ7L8J4 393 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 WHAMMQ8TF30 809 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 KDM2AQ9Y2K7 1162 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 CUX2O14529 1486 aa7.53□□□□□ -1.2
LIMA1-206ENST00000550611 PER1O15534 1290 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-206ENST00000550611 SCARF2Q96GP6 870 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-206ENST00000550611 FIGNL2A6NMB9 653 aa7.51□□□□□ -1.21
LIMA1-206ENST00000550611 ITGA6P23229 1130 aa7.51□□□□□ -1.21
LIMA1-206ENST00000550611 MARSP56192 900 aaKnown RBP7.51□□□□□ -1.21
LIMA1-206ENST00000550611 BARGINQ6ZT62 677 aa7.5□□□□□ -1.21
LIMA1-206ENST00000550611 VWA5B2Q8N398 1253 aa7.5□□□□□ -1.21
LIMA1-206ENST00000550611 PGPEP1Q9NXJ5 209 aa7.5□□□□□ -1.21
LIMA1-206ENST00000550611 PPP1R26Q5T8A7 1209 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-206ENST00000550611 SV2AQ7L0J3 742 aa7.49□□□□□ -1.21
LIMA1-206ENST00000550611 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIMA1-206ENST00000550611 RIC3Q7Z5B4 369 aa7.49□□□□□ -1.21
LIMA1-206ENST00000550611 CABLES1Q8TDN4 633 aa7.49□□□□□ -1.21
LIMA1-206ENST00000550611 GPKOWQ92917 476 aaPredicted RBP eCLIP7.49□□□□□ -1.21
LIMA1-206ENST00000550611 SHROOM4Q9ULL8 1493 aa7.49□□□□□ -1.21
LIMA1-206ENST00000550611 CBLBQ13191 982 aa7.47□□□□□ -1.21
LIMA1-206ENST00000550611 TUSC1Q2TAM9 212 aa7.47□□□□□ -1.21
LIMA1-206ENST00000550611 MAGEB6P1A0A0J9YX57 407 aa7.46□□□□□ -1.22
LIMA1-206ENST00000550611 ADAMTS2O95450 1211 aa7.46□□□□□ -1.22
LIMA1-206ENST00000550611 ERFEQ4G0M1 354 aa7.46□□□□□ -1.22
LIMA1-206ENST00000550611 ERCC6Q03468 1493 aa7.46□□□□□ -1.22
LIMA1-206ENST00000550611 CDC14CA4D256 554 aa7.45□□□□□ -1.22
LIMA1-206ENST00000550611 ZMYND10O75800 440 aa7.45□□□□□ -1.22
LIMA1-206ENST00000550611 SRSF11Q05519 484 aaKnown RBP7.45□□□□□ -1.22
LIMA1-206ENST00000550611 XP32Q5T750 250 aa7.45□□□□□ -1.22
LIMA1-206ENST00000550611 CDV3Q9UKY7 258 aaKnown RBP7.45□□□□□ -1.22
LIMA1-206ENST00000550611 DCAF1Q9Y4B6 1507 aa7.45□□□□□ -1.22
LIMA1-206ENST00000550611 HAP1P54257 671 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-206ENST00000550611 MAP3K10Q02779 954 aa7.44□□□□□ -1.22
LIMA1-206ENST00000550611 DHX9Q08211 1270 aaKnown RBP7.44□□□□□ -1.22
LIMA1-206ENST00000550611 LYPD4Q6UWN0 246 aa7.44□□□□□ -1.22
LIMA1-206ENST00000550611 PARP9Q8IXQ6 854 aa7.44□□□□□ -1.22
LIMA1-206ENST00000550611 SENP3-EIF4A1A0A087X0R7 540 aa7.43□□□□□ -1.22
LIMA1-206ENST00000550611 LILRB3O75022 631 aa7.43□□□□□ -1.22
LIMA1-206ENST00000550611 CTSOP43234 321 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-206ENST00000550611 CSPP1Q1MSJ5 1256 aa7.43□□□□□ -1.22
LIMA1-206ENST00000550611 HELBQ8NG08 1087 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-206ENST00000550611 TSC1Q92574 1164 aa7.43□□□□□ -1.22
LIMA1-206ENST00000550611 CARD14Q9BXL6 1004 aa7.43□□□□□ -1.22
LIMA1-206ENST00000550611 ZCCHC6Q5VYS8 1495 aaKnown RBP7.43□□□□□ -1.22
LIMA1-206ENST00000550611 NUTM2BA6NNL0 878 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-206ENST00000550611 NUTM2EB1AL46 878 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-206ENST00000550611 MSTNO14793 375 aa7.42□□□□□ -1.22
LIMA1-206ENST00000550611 ADAM23O75077 832 aa7.42□□□□□ -1.22
LIMA1-206ENST00000550611 QPCTQ16769 361 aa7.42□□□□□ -1.22
LIMA1-206ENST00000550611 NUTM2DQ5VT03 806 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-206ENST00000550611 NUTM2AQ8IVF1 878 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-206ENST00000550611 KCTD15Q96SI1 283 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-206ENST00000550611 ENAMQ9NRM1 1142 aa7.42□□□□□ -1.22
LIMA1-206ENST00000550611 CELA2BP08218 269 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-206ENST00000550611 PDXDC2PQ6P474 469 aa7.41□□□□□ -1.22
LIMA1-206ENST00000550611 RNF217Q8TC41 542 aa7.41□□□□□ -1.22
LIMA1-206ENST00000550611 AGBL1Q96MI9 1066 aa7.41□□□□□ -1.22
LIMA1-206ENST00000550611 INSM2Q96T92 566 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-206ENST00000550611 LIMD1Q9UGP4 676 aa7.41□□□□□ -1.22
LIMA1-206ENST00000550611 PLA2G4EQ3MJ16 856 aa7.4□□□□□ -1.22
LIMA1-206ENST00000550611 MYSM1Q5VVJ2 828 aa7.4□□□□□ -1.22
LIMA1-206ENST00000550611 SLC10A4Q96EP9 437 aa7.4□□□□□ -1.22
LIMA1-206ENST00000550611 PHF20L1A8MW92 1017 aa7.39□□□□□ -1.23
LIMA1-206ENST00000550611 RELBQ01201 579 aa7.39□□□□□ -1.23
LIMA1-206ENST00000550611 GAS6Q14393 721 aa7.39□□□□□ -1.23
LIMA1-206ENST00000550611 DCAF5Q96JK2 942 aa7.39□□□□□ -1.23
LIMA1-206ENST00000550611 SPOCK3Q9BQ16 436 aa7.39□□□□□ -1.23
LIMA1-206ENST00000550611 POLMQ9NP87 494 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-206ENST00000550611 INTS6LQ5JSJ4 861 aaKnown RBP7.38□□□□□ -1.23
LIMA1-206ENST00000550611 ARHGAP9Q9BRR9 750 aa7.38□□□□□ -1.23
LIMA1-206ENST00000550611 SCRIBQ14160 1630 aa7.38□□□□□ -1.23
LIMA1-206ENST00000550611 ITGB2P05107 769 aa7.37□□□□□ -1.23
LIMA1-206ENST00000550611 ZC3H15Q8WU90 426 aaKnown RBP7.37□□□□□ -1.23
LIMA1-206ENST00000550611 ZC3H4Q9UPT8 1303 aaKnown RBP7.36□□□□□ -1.23
LIMA1-206ENST00000550611 TRIM66O15016 1216 aa7.36□□□□□ -1.23
LIMA1-206ENST00000550611 RTL5Q5HYW3 569 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-206ENST00000550611 VSIG10Q8N0Z9 540 aa7.36□□□□□ -1.23
LIMA1-206ENST00000550611 BEND7Q8N7W2 519 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-206ENST00000550611 GMCL1Q96IK5 515 aa7.36□□□□□ -1.23
LIMA1-206ENST00000550611 FKBPLQ9UIM3 349 aa7.36□□□□□ -1.23
LIMA1-206ENST00000550611 PROCP04070 461 aa7.35□□□□□ -1.23
LIMA1-206ENST00000550611 ZNF395Q9H8N7 513 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-206ENST00000550611 CUEDC1Q9NWM3 386 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-206ENST00000550611 ADH1AP07327 375 aa7.34□□□□□ -1.23
LIMA1-206ENST00000550611 FOXD4L5Q5VV16 416 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-206ENST00000550611 PODNQ7Z5L7 613 aa7.34□□□□□ -1.23
LIMA1-206ENST00000550611 ZBTB33Q86T24 672 aa7.34□□□□□ -1.23
LIMA1-206ENST00000550611 MBIPQ9NS73 344 aa7.34□□□□□ -1.23
LIMA1-206ENST00000550611 LRRC4BQ9NT99 713 aa7.34□□□□□ -1.23
LIMA1-206ENST00000550611 CNTNAP5Q8WYK1 1306 aa7.33□□□□□ -1.24
LIMA1-206ENST00000550611 PTGIRP43119 386 aa7.33□□□□□ -1.24
LIMA1-206ENST00000550611 LYSMD3Q7Z3D4 306 aa7.33□□□□□ -1.24
LIMA1-206ENST00000550611 GPSM3Q9Y4H4 160 aa7.33□□□□□ -1.24
LIMA1-206ENST00000550611 NESP48681 1621 aa7.33□□□□□ -1.24
LIMA1-206ENST00000550611 LILRA1O75019 489 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms