RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 HSPA5P11021 654 aaKnown RBP10.09□□□□□ -0.79
PTCH1-219ENST00000549678 PDE3BQ13370 1112 aa10.09□□□□□ -0.79
PTCH1-219ENST00000549678 LARP1Q6PKG0 1096 aaKnown RBP10.09□□□□□ -0.79
PTCH1-219ENST00000549678 A0A1W2PP64 1363 aa10.09□□□□□ -0.79
PTCH1-219ENST00000549678 COL5A2P05997 1499 aaPredicted RBP10.09□□□□□ -0.79
PTCH1-219ENST00000549678 CRB1P82279 1406 aa10.08□□□□□ -0.8
PTCH1-219ENST00000549678 CPSF1Q10570 1443 aaKnown RBP10.08□□□□□ -0.8
PTCH1-219ENST00000549678 EDC4Q6P2E9 1401 aaKnown RBP10.08□□□□□ -0.8
PTCH1-219ENST00000549678 CDCA7Q9BWT1 371 aaPredicted RBP10.08□□□□□ -0.8
PTCH1-219ENST00000549678 KIF20BQ96Q89 1820 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 MYOM1P52179 1685 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 ANKRD36BQ8N2N9 1353 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 ARHGEF25Q86VW2 580 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 USP35Q9P2H5 1018 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 ABCC6O95255 1503 aa10.07□□□□□ -0.8
PTCH1-219ENST00000549678 LTN1O94822 1766 aa10.06□□□□□ -0.8
PTCH1-219ENST00000549678 CD163L1Q9NR16 1453 aa10.06□□□□□ -0.8
PTCH1-219ENST00000549678 USP31Q70CQ4 1352 aa10.06□□□□□ -0.8
PTCH1-219ENST00000549678 EN1Q05925 392 aaPredicted RBP10.06□□□□□ -0.8
PTCH1-219ENST00000549678 WDR17Q8IZU2 1322 aa10.06□□□□□ -0.8
PTCH1-219ENST00000549678 PARP4Q9UKK3 1724 aaKnown RBP10.05□□□□□ -0.8
PTCH1-219ENST00000549678 TRIM37O94972 964 aa10.05□□□□□ -0.8
PTCH1-219ENST00000549678 TOM1L2Q6ZVM7 507 aa10.05□□□□□ -0.8
PTCH1-219ENST00000549678 NME9Q86XW9 330 aa10.05□□□□□ -0.8
PTCH1-219ENST00000549678 COG3Q96JB2 828 aa10.05□□□□□ -0.8
PTCH1-219ENST00000549678 USP54Q70EL1 1684 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 FAM182BQ5T319 152 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 CAMKK2Q96RR4 588 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 OVOS2A0A0G2JMS6 1433 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 OVOS2A0A0J9YW53 1432 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 OVOS2Q6IE36 1432 aa10.04□□□□□ -0.8
PTCH1-219ENST00000549678 TNS1Q9HBL0 1735 aaKnown RBP10.04□□□□□ -0.8
PTCH1-219ENST00000549678 COL18A1P39060 1754 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 RGPD5Q99666 1765 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 BCL9O00512 1426 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 APBA3O96018 575 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 CSB-PGBD3P0DP91 1061 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 DDB1Q16531 1140 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 CARD10Q9BWT7 1032 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 LRP5O75197 1615 aa10.03□□□□□ -0.8
PTCH1-219ENST00000549678 NFAT5O94916 1531 aa10.02□□□□□ -0.8
PTCH1-219ENST00000549678 CCDC7Q96M83 1385 aa10.02□□□□□ -0.8
PTCH1-219ENST00000549678 NSD3Q9BZ95 1437 aa10.02□□□□□ -0.81
PTCH1-219ENST00000549678 AXIN2Q9Y2T1 843 aa10.02□□□□□ -0.81
PTCH1-219ENST00000549678 EZH2Q15910 746 aaKnown RBP10.01□□□□□ -0.81
PTCH1-219ENST00000549678 PSDA5PKW4 1024 aaPredicted RBP10□□□□□ -0.81
PTCH1-219ENST00000549678 NBPF14Q5TI25 921 aa10□□□□□ -0.81
PTCH1-219ENST00000549678 GGNBP2Q9H3C7 697 aa10□□□□□ -0.81
PTCH1-219ENST00000549678 ANKRD26Q9UPS8 1709 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 PLSCR1O15162 318 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 AMPHP49418 695 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 R3HDM1Q15032 1099 aaKnown RBP9.99□□□□□ -0.81
PTCH1-219ENST00000549678 BCL11BQ9C0K0 894 aaPredicted RBP9.99□□□□□ -0.81
PTCH1-219ENST00000549678 ERBB3P21860 1342 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 CGNL1Q0VF96 1302 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 LRRC37A3O60309 1634 aa9.99□□□□□ -0.81
PTCH1-219ENST00000549678 EXOC5O00471 708 aa9.98□□□□□ -0.81
PTCH1-219ENST00000549678 PEAK1Q9H792 1746 aa9.98□□□□□ -0.81
PTCH1-219ENST00000549678 RGPD3A6NKT7 1758 aaPredicted RBP9.98□□□□□ -0.81
PTCH1-219ENST00000549678 RGPD4Q7Z3J3 1758 aa9.98□□□□□ -0.81
PTCH1-219ENST00000549678 WNK3Q9BYP7 1800 aa9.98□□□□□ -0.81
PTCH1-219ENST00000549678 RREB1Q92766 1687 aa9.97□□□□□ -0.81
PTCH1-219ENST00000549678 FAM208AQ9UK61 1670 aaKnown RBP9.97□□□□□ -0.81
PTCH1-219ENST00000549678 LTV1Q96GA3 475 aaPredicted RBP9.97□□□□□ -0.81
PTCH1-219ENST00000549678 PANK3Q9H999 370 aa9.97□□□□□ -0.81
PTCH1-219ENST00000549678 KIF7Q2M1P5 1343 aa9.97□□□□□ -0.81
PTCH1-219ENST00000549678 TNS2Q63HR2 1409 aa9.97□□□□□ -0.81
PTCH1-219ENST00000549678 SMG6Q86US8 1419 aaKnown RBP9.97□□□□□ -0.81
PTCH1-219ENST00000549678 FYB1O15117 783 aa9.96□□□□□ -0.82
PTCH1-219ENST00000549678 MARCH10Q8NA82 808 aaPredicted RBP9.96□□□□□ -0.82
PTCH1-219ENST00000549678 KNSTRNQ9Y448 316 aa9.96□□□□□ -0.82
PTCH1-219ENST00000549678 SBF2Q86WG5 1849 aa9.96□□□□□ -0.82
PTCH1-219ENST00000549678 PPM1GO15355 546 aaPredicted RBP9.95□□□□□ -0.82
PTCH1-219ENST00000549678 IL2RBP14784 551 aa9.95□□□□□ -0.82
PTCH1-219ENST00000549678 ANKRD24Q8TF21 1146 aa9.95□□□□□ -0.82
PTCH1-219ENST00000549678 IP6K1Q92551 441 aa9.95□□□□□ -0.82
PTCH1-219ENST00000549678 NLRP2Q9NX02 1062 aa9.95□□□□□ -0.82
PTCH1-219ENST00000549678 MAP2P11137 1827 aaKnown RBP9.95□□□□□ -0.82
PTCH1-219ENST00000549678 NUP188Q5SRE5 1749 aa9.94□□□□□ -0.82
PTCH1-219ENST00000549678 TNNT2P45379 298 aaPredicted RBP9.94□□□□□ -0.82
PTCH1-219ENST00000549678 CNGB1Q14028 1251 aaPredicted RBP9.94□□□□□ -0.82
PTCH1-219ENST00000549678 RRS1Q15050 365 aaKnown RBP9.94□□□□□ -0.82
PTCH1-219ENST00000549678 CARD14Q9BXL6 1004 aa9.94□□□□□ -0.82
PTCH1-219ENST00000549678 RTL1A6NKG5 1358 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 NSD2O96028 1365 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 MAP3K19Q56UN5 1328 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 FBLN1P23142 703 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 ZEB1P37275 1124 aaPredicted RBP9.93□□□□□ -0.82
PTCH1-219ENST00000549678 KAT6BQ8WYB5 2073 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 RGPD2P0DJD1 1756 aa9.93□□□□□ -0.82
PTCH1-219ENST00000549678 UTRNP46939 3433 aa9.92□□□□□ -0.82
PTCH1-219ENST00000549678 HOXC9P31274 260 aa9.92□□□□□ -0.82
PTCH1-219ENST00000549678 MORC1Q86VD1 984 aa9.92□□□□□ -0.82
PTCH1-219ENST00000549678 FLT4P35916 1363 aa9.91□□□□□ -0.82
PTCH1-219ENST00000549678 KIF24Q5T7B8 1368 aa9.91□□□□□ -0.82
PTCH1-219ENST00000549678 SPON1Q9HCB6 807 aa9.91□□□□□ -0.82
PTCH1-219ENST00000549678 KCNQ2O43526 872 aa9.9□□□□□ -0.82
PTCH1-219ENST00000549678 TXNRD1Q16881 649 aa9.9□□□□□ -0.82
PTCH1-219ENST00000549678 WASHC2AQ641Q2 1341 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 CC2D1BQ5T0F9 858 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms