RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 POLR3EQ9NVU0 708 aa9.14□□□□□ -0.95
SCAF11-210ENST00000547654 DNMT3LQ9UJW3 386 aa9.14□□□□□ -0.95
SCAF11-210ENST00000547654 PGPEP1Q9NXJ5 209 aa9.13□□□□□ -0.95
SCAF11-210ENST00000547654 ERFEQ4G0M1 354 aa9.12□□□□□ -0.95
SCAF11-210ENST00000547654 XP32Q5T750 250 aa9.12□□□□□ -0.95
SCAF11-210ENST00000547654 FBXO31Q5XUX0 539 aaPredicted RBP9.12□□□□□ -0.95
SCAF11-210ENST00000547654 SLC10A4Q96EP9 437 aa9.12□□□□□ -0.95
SCAF11-210ENST00000547654 TTLL8A6PVC2 850 aa9.11□□□□□ -0.95
SCAF11-210ENST00000547654 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.11□□□□□ -0.95
SCAF11-210ENST00000547654 ARHGAP9Q9BRR9 750 aa9.11□□□□□ -0.95
SCAF11-210ENST00000547654 KDM4CQ9H3R0 1056 aa9.11□□□□□ -0.95
SCAF11-210ENST00000547654 KCNMA1Q12791 1236 aa9.1□□□□□ -0.95
SCAF11-210ENST00000547654 PPP1R26Q5T8A7 1209 aaPredicted RBP9.09□□□□□ -0.95
SCAF11-210ENST00000547654 FAM117AQ9C073 453 aa9.09□□□□□ -0.95
SCAF11-210ENST00000547654 CTDSPL2Q05D32 466 aa9.08□□□□□ -0.96
SCAF11-210ENST00000547654 PDXDC2PQ6P474 469 aa9.08□□□□□ -0.96
SCAF11-210ENST00000547654 KRTAP4-8Q9BYQ9 185 aa9.08□□□□□ -0.96
SCAF11-210ENST00000547654 FKBPLQ9UIM3 349 aa9.08□□□□□ -0.96
SCAF11-210ENST00000547654 CDV3Q9UKY7 258 aaKnown RBP9.08□□□□□ -0.96
SCAF11-210ENST00000547654 ATP1B4Q9UN42 357 aaPredicted RBP9.08□□□□□ -0.96
SCAF11-210ENST00000547654 CBLBQ13191 982 aa9.07□□□□□ -0.96
SCAF11-210ENST00000547654 ZBTB33Q86T24 672 aa9.07□□□□□ -0.96
SCAF11-210ENST00000547654 PTSQ03393 145 aa9.06□□□□□ -0.96
SCAF11-210ENST00000547654 DHX9Q08211 1270 aaKnown RBP9.06□□□□□ -0.96
SCAF11-210ENST00000547654 LRRN4Q8WUT4 740 aa9.06□□□□□ -0.96
SCAF11-210ENST00000547654 KCTD15Q96SI1 283 aaPredicted RBP9.06□□□□□ -0.96
SCAF11-210ENST00000547654 ZC3H4Q9UPT8 1303 aaKnown RBP9.05□□□□□ -0.96
SCAF11-210ENST00000547654 FIGNL2A6NMB9 653 aa9.05□□□□□ -0.96
SCAF11-210ENST00000547654 BRPF1P55201 1214 aaPredicted RBP9.05□□□□□ -0.96
SCAF11-210ENST00000547654 SPINT1O43278 529 aa9.04□□□□□ -0.96
SCAF11-210ENST00000547654 Q6ZVU0 165 aa9.04□□□□□ -0.96
SCAF11-210ENST00000547654 PTK2Q05397 1052 aa9.03□□□□□ -0.96
SCAF11-210ENST00000547654 NR6A1Q15406 480 aa9.03□□□□□ -0.96
SCAF11-210ENST00000547654 TPRNQ4KMQ1 711 aa9.03□□□□□ -0.96
SCAF11-210ENST00000547654 TMEM151AQ8N4L1 468 aa9.03□□□□□ -0.96
SCAF11-210ENST00000547654 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.03□□□□□ -0.96
SCAF11-210ENST00000547654 CCDC155Q8N6L0 562 aa9.02□□□□□ -0.97
SCAF11-210ENST00000547654 PNMA1Q8ND90 353 aa9.02□□□□□ -0.97
SCAF11-210ENST00000547654 CNTNAP3BQ96NU0 1288 aa9.02□□□□□ -0.97
SCAF11-210ENST00000547654 CNTNAP3Q9BZ76 1288 aa9.02□□□□□ -0.97
SCAF11-210ENST00000547654 SKIV2LQ15477 1246 aaKnown RBP9.01□□□□□ -0.97
SCAF11-210ENST00000547654 NBPF20Q3BBV1 942 aa9.01□□□□□ -0.97
SCAF11-210ENST00000547654 SH3D19Q5HYK7 790 aa9.01□□□□□ -0.97
SCAF11-210ENST00000547654 INTS6LQ5JSJ4 861 aaKnown RBP9.01□□□□□ -0.97
SCAF11-210ENST00000547654 GDF11O95390 407 aa9□□□□□ -0.97
SCAF11-210ENST00000547654 RELBQ01201 579 aa9□□□□□ -0.97
SCAF11-210ENST00000547654 KRT76Q01546 638 aa9□□□□□ -0.97
SCAF11-210ENST00000547654 AGBL1Q96MI9 1066 aa9□□□□□ -0.97
SCAF11-210ENST00000547654 POLMQ9NP87 494 aaPredicted RBP9□□□□□ -0.97
SCAF11-210ENST00000547654 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-210ENST00000547654 AP1G2O75843 785 aa8.99□□□□□ -0.97
SCAF11-210ENST00000547654 RAB15P59190 212 aa8.99□□□□□ -0.97
SCAF11-210ENST00000547654 GPR161Q8N6U8 529 aaKnown RBP8.99□□□□□ -0.97
SCAF11-210ENST00000547654 COL25A1Q9BXS0 654 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-210ENST00000547654 GPSM3Q9Y4H4 160 aa8.99□□□□□ -0.97
SCAF11-210ENST00000547654 CDC14CA4D256 554 aa8.98□□□□□ -0.97
SCAF11-210ENST00000547654 RNF225M0QZC1 329 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-210ENST00000547654 PRKCSHP14314 528 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-210ENST00000547654 CTSOP43234 321 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-210ENST00000547654 RASSF7Q02833 373 aa8.98□□□□□ -0.97
SCAF11-210ENST00000547654 PROCA1Q8NCQ7 364 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-210ENST00000547654 ADAM32Q8TC27 787 aa8.98□□□□□ -0.97
SCAF11-210ENST00000547654 DDRGK1Q96HY6 314 aa8.98□□□□□ -0.97
SCAF11-210ENST00000547654 INSM2Q96T92 566 aaPredicted RBP8.98□□□□□ -0.97
SCAF11-210ENST00000547654 PPP2R2DQ66LE6 453 aa8.97□□□□□ -0.97
SCAF11-210ENST00000547654 NANOS1Q8WY41 292 aaKnown RBP8.97□□□□□ -0.97
SCAF11-210ENST00000547654 ITGA6P23229 1130 aa8.96□□□□□ -0.98
SCAF11-210ENST00000547654 SVOPQ8N4V2 548 aa8.96□□□□□ -0.98
SCAF11-210ENST00000547654 GOPCQ9HD26 462 aa8.96□□□□□ -0.98
SCAF11-210ENST00000547654 SLC35F4A4IF30 521 aa8.95□□□□□ -0.98
SCAF11-210ENST00000547654 DZIP3Q86Y13 1208 aaKnown RBP8.95□□□□□ -0.98
SCAF11-210ENST00000547654 ZNF784Q8NCA9 323 aaPredicted RBP8.95□□□□□ -0.98
SCAF11-210ENST00000547654 OCSTAMPQ9BR26 566 aa8.95□□□□□ -0.98
SCAF11-210ENST00000547654 ZNF395Q9H8N7 513 aaPredicted RBP8.95□□□□□ -0.98
SCAF11-210ENST00000547654 SV2AQ7L0J3 742 aa8.94□□□□□ -0.98
SCAF11-210ENST00000547654 RNF217Q8TC41 542 aa8.94□□□□□ -0.98
SCAF11-210ENST00000547654 KRTAP9-2Q9BYQ4 174 aa8.94□□□□□ -0.98
SCAF11-210ENST00000547654 TMPRSS4Q9NRS4 437 aa8.94□□□□□ -0.98
SCAF11-210ENST00000547654 ADH1AP07327 375 aa8.93□□□□□ -0.98
SCAF11-210ENST00000547654 USP17L8P0C7I0 530 aa8.93□□□□□ -0.98
SCAF11-210ENST00000547654 RNFT1Q5M7Z0 435 aa8.93□□□□□ -0.98
SCAF11-210ENST00000547654 VWA5B2Q8N398 1253 aa8.93□□□□□ -0.98
SCAF11-210ENST00000547654 ADAMTS8Q9UP79 889 aa8.93□□□□□ -0.98
SCAF11-210ENST00000547654 HMX1Q9NP08 348 aaPredicted RBP8.92□□□□□ -0.98
SCAF11-210ENST00000547654 KRTAP9-6A0A140TA67 174 aa8.91□□□□□ -0.98
SCAF11-210ENST00000547654 ZNF385CQ66K41 422 aaPredicted RBP8.91□□□□□ -0.98
SCAF11-210ENST00000547654 GPAT2Q6NUI2 795 aa8.91□□□□□ -0.98
SCAF11-210ENST00000547654 EPS8L1Q8TE68 723 aa8.91□□□□□ -0.98
SCAF11-210ENST00000547654 TRIM52Q96A61 297 aa8.91□□□□□ -0.98
SCAF11-210ENST00000547654 ERVH48-1M5A8F1 160 aa8.9□□□□□ -0.98
SCAF11-210ENST00000547654 NEUROD2Q15784 382 aa8.9□□□□□ -0.98
SCAF11-210ENST00000547654 SENP3-EIF4A1A0A087X0R7 540 aa8.88□□□□□ -0.99
SCAF11-210ENST00000547654 LILRA1O75019 489 aa8.88□□□□□ -0.99
SCAF11-210ENST00000547654 SLURP2P0DP57 97 aa8.88□□□□□ -0.99
SCAF11-210ENST00000547654 PTGIRP43119 386 aa8.88□□□□□ -0.99
SCAF11-210ENST00000547654 FOXD4L5Q5VV16 416 aaPredicted RBP8.88□□□□□ -0.99
SCAF11-210ENST00000547654 CYLDQ9NQC7 956 aa8.88□□□□□ -0.99
SCAF11-210ENST00000547654 LYSMD3Q7Z3D4 306 aa8.87□□□□□ -0.99
SCAF11-210ENST00000547654 WHAMMQ8TF30 809 aa8.87□□□□□ -0.99
SCAF11-210ENST00000547654 RFC5P40937 340 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms