RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 AEBP2Q6ZN18 517 aaPredicted RBP27.14■■□□□ 1.94
SCAF11-210ENST00000547654 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
SCAF11-210ENST00000547654 SENP3Q9H4L4 574 aaPredicted RBP23.17■■□□□ 1.3
SCAF11-210ENST00000547654 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
SCAF11-210ENST00000547654 POTEDQ86YR6 584 aa21.95■■□□□ 1.1
SCAF11-210ENST00000547654 FOXD1Q16676 465 aa21.81■■□□□ 1.08
SCAF11-210ENST00000547654 MSH5O43196 834 aa20.67■□□□□ 0.9
SCAF11-210ENST00000547654 PLPPR3Q6T4P5 718 aa20.31■□□□□ 0.84
SCAF11-210ENST00000547654 PIAS4Q8N2W9 510 aaPredicted RBP20.12■□□□□ 0.81
SCAF11-210ENST00000547654 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
SCAF11-210ENST00000547654 ADRA2BP18089 450 aa19.79■□□□□ 0.76
SCAF11-210ENST00000547654 CACNB1Q02641 598 aaPredicted RBP18.41■□□□□ 0.54
SCAF11-210ENST00000547654 MAPK8IP2Q13387 824 aaPredicted RBP18.3■□□□□ 0.52
SCAF11-210ENST00000547654 DMRT2Q9Y5R5 561 aa18.25■□□□□ 0.51
SCAF11-210ENST00000547654 SCAF1Q9H7N4 1312 aaKnown RBP18.19■□□□□ 0.5
SCAF11-210ENST00000547654 PPP4R3CPQ6ZMV5 832 aa17.77■□□□□ 0.44
SCAF11-210ENST00000547654 DCAF8L1A6NGE4 600 aa17.62■□□□□ 0.41
SCAF11-210ENST00000547654 RNF39Q9H2S5 420 aa17.61■□□□□ 0.41
SCAF11-210ENST00000547654 CNKSR2Q8WXI2 1034 aa17.46■□□□□ 0.39
SCAF11-210ENST00000547654 HOXD11P31277 338 aaPredicted RBP17.39■□□□□ 0.37
SCAF11-210ENST00000547654 RNF216Q9NWF9 866 aaPredicted RBP17.29■□□□□ 0.36
SCAF11-210ENST00000547654 C1QBPQ07021 282 aaKnown RBP17.24■□□□□ 0.35
SCAF11-210ENST00000547654 NCBP3Q53F19 620 aaKnown RBP17.15■□□□□ 0.34
SCAF11-210ENST00000547654 POTEHQ6S545 545 aa16.98■□□□□ 0.31
SCAF11-210ENST00000547654 NPM3O75607 178 aaKnown RBP16.83■□□□□ 0.28
SCAF11-210ENST00000547654 DNAJC5BQ9UF47 199 aa16.79■□□□□ 0.28
SCAF11-210ENST00000547654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.66■□□□□ 0.267e-7■□□□□ 9.1
SCAF11-210ENST00000547654 KCNA4P22459 653 aa16.5■□□□□ 0.23
SCAF11-210ENST00000547654 U3KPZ7 1027 aaPredicted RBP16.24■□□□□ 0.19
SCAF11-210ENST00000547654 DSG3P32926 999 aa16.18■□□□□ 0.18
SCAF11-210ENST00000547654 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
SCAF11-210ENST00000547654 CAPN15O75808 1086 aa16.05■□□□□ 0.16
SCAF11-210ENST00000547654 SLC4A2P04920 1241 aa16.04■□□□□ 0.16
SCAF11-210ENST00000547654 APLP2Q06481 763 aa15.91■□□□□ 0.14
SCAF11-210ENST00000547654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
SCAF11-210ENST00000547654 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
SCAF11-210ENST00000547654 TRHP20396 242 aaPredicted RBP15.79■□□□□ 0.12
SCAF11-210ENST00000547654 ZNF219Q9P2Y4 722 aaPredicted RBP15.77■□□□□ 0.12
SCAF11-210ENST00000547654 SAMD1Q6SPF0 538 aaPredicted RBP15.76■□□□□ 0.11
SCAF11-210ENST00000547654 ABCB7O75027 752 aa15.67■□□□□ 0.1
SCAF11-210ENST00000547654 SLC4A1APQ9BWU0 796 aaKnown RBP15.63■□□□□ 0.09
SCAF11-210ENST00000547654 MYCNP04198 464 aaPredicted RBP15.62■□□□□ 0.09
SCAF11-210ENST00000547654 CHRDL2Q6WN34 429 aa15.5■□□□□ 0.07
SCAF11-210ENST00000547654 SP7Q8TDD2 431 aaPredicted RBP15.45■□□□□ 0.06
SCAF11-210ENST00000547654 FOXD4L1Q9NU39 408 aa15.44■□□□□ 0.06
SCAF11-210ENST00000547654 RBM42Q9BTD8 480 aaKnown RBP15.35■□□□□ 0.05
SCAF11-210ENST00000547654 POLA2Q14181 598 aa15.32■□□□□ 0.04
SCAF11-210ENST00000547654 ATF5Q9Y2D1 282 aaPredicted RBP15.18■□□□□ 0.02
SCAF11-210ENST00000547654 ZBTB22O15209 634 aa15.15■□□□□ 0.02
SCAF11-210ENST00000547654 ZBTB12Q9Y330 459 aaPredicted RBP15.09■□□□□ 0.01
SCAF11-210ENST00000547654 ATXN8OSP0DMR3 200 aa14.95□□□□□ -0.02
SCAF11-210ENST00000547654 PIP4P2Q8N4L2 257 aa14.95□□□□□ -0.02
SCAF11-210ENST00000547654 HAX1O00165 279 aa14.94□□□□□ -0.02
SCAF11-210ENST00000547654 OSCARQ8IYS5 282 aa14.87□□□□□ -0.03
SCAF11-210ENST00000547654 AKT1S1Q96B36 256 aa14.84□□□□□ -0.03
SCAF11-210ENST00000547654 EVX2Q03828 476 aa14.77□□□□□ -0.05
SCAF11-210ENST00000547654 REM2Q8IYK8 340 aaPredicted RBP14.76□□□□□ -0.05
SCAF11-210ENST00000547654 FBLN2P98095 1184 aa14.7□□□□□ -0.06
SCAF11-210ENST00000547654 FXR2P51116 673 aaKnown RBP eCLIP14.66□□□□□ -0.063e-6■□□□□ 10
SCAF11-210ENST00000547654 PITPNM1O00562 1244 aa14.64□□□□□ -0.07
SCAF11-210ENST00000547654 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
SCAF11-210ENST00000547654 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
SCAF11-210ENST00000547654 SPDYE2Q495Y8 402 aa14.57□□□□□ -0.08
SCAF11-210ENST00000547654 MKRN4PQ13434 485 aaPredicted RBP14.48□□□□□ -0.09
SCAF11-210ENST00000547654 LHX8Q68G74 356 aa14.48□□□□□ -0.09
SCAF11-210ENST00000547654 PLSCR2Q9NRY7 297 aa14.44□□□□□ -0.1
SCAF11-210ENST00000547654 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
SCAF11-210ENST00000547654 ZNF692Q9BU19 519 aaPredicted RBP14.4□□□□□ -0.1
SCAF11-210ENST00000547654 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
SCAF11-210ENST00000547654 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
SCAF11-210ENST00000547654 SPDYE1Q8NFV5 336 aaPredicted RBP14.33□□□□□ -0.12
SCAF11-210ENST00000547654 CLEC11AQ9Y240 323 aa14.32□□□□□ -0.12
SCAF11-210ENST00000547654 GABBR2O75899 941 aa14.29□□□□□ -0.12
SCAF11-210ENST00000547654 C19orf67A6NJJ6 358 aa14.23□□□□□ -0.13
SCAF11-210ENST00000547654 PRKAR2AP13861 404 aaKnown RBP14.23□□□□□ -0.13
SCAF11-210ENST00000547654 PABPN1Q86U42 306 aaKnown RBP eCLIP14.18□□□□□ -0.14
SCAF11-210ENST00000547654 PRR29P0C7W0 189 aa14.07□□□□□ -0.16
SCAF11-210ENST00000547654 POTEIP0CG38 1075 aa14.03□□□□□ -0.16
SCAF11-210ENST00000547654 CHADLQ6NUI6 762 aa14.01□□□□□ -0.17
SCAF11-210ENST00000547654 SPDYE4A6NLX3 237 aa13.87□□□□□ -0.19
SCAF11-210ENST00000547654 STAG3Q9UJ98 1225 aa13.81□□□□□ -0.2
SCAF11-210ENST00000547654 FARP1Q9Y4F1 1045 aaPredicted RBP13.8□□□□□ -0.2
SCAF11-210ENST00000547654 CD44P16070 742 aaKnown RBP13.75□□□□□ -0.21
SCAF11-210ENST00000547654 POTEMA6NI47 508 aa13.71□□□□□ -0.21
SCAF11-210ENST00000547654 OTUD5Q96G74 571 aa13.68□□□□□ -0.22
SCAF11-210ENST00000547654 DCBLD2Q96PD2 775 aa13.67□□□□□ -0.22
SCAF11-210ENST00000547654 CREBZFQ9NS37 354 aa13.66□□□□□ -0.22
SCAF11-210ENST00000547654 POTEGQ6S5H5 508 aa13.64□□□□□ -0.23
SCAF11-210ENST00000547654 POTEB2H3BUK9 544 aa13.57□□□□□ -0.24
SCAF11-210ENST00000547654 CLCN6P51797 869 aa13.55□□□□□ -0.24
SCAF11-210ENST00000547654 ZRANB1Q9UGI0 708 aa13.55□□□□□ -0.24
SCAF11-210ENST00000547654 ZNF579Q8NAF0 562 aaKnown RBP13.52□□□□□ -0.25
SCAF11-210ENST00000547654 PAK3O75914 559 aaPredicted RBP13.51□□□□□ -0.25
SCAF11-210ENST00000547654 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
SCAF11-210ENST00000547654 PROM2Q8N271 834 aa13.45□□□□□ -0.26
SCAF11-210ENST00000547654 GALR2O43603 387 aaPredicted RBP13.4□□□□□ -0.26
SCAF11-210ENST00000547654 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
SCAF11-210ENST00000547654 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
SCAF11-210ENST00000547654 PHF12Q96QT6 1004 aa13.35□□□□□ -0.27
SCAF11-210ENST00000547654 PLEKHG5O94827 1062 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms