RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 AXIN2Q9Y2T1 843 aa18.68■□□□□ 0.58
PTCH1-213ENST00000546820 BCL9LQ86UU0 1499 aa18.68■□□□□ 0.58
PTCH1-213ENST00000546820 NWD2Q9ULI1 1742 aa18.67■□□□□ 0.58
PTCH1-213ENST00000546820 KIF24Q5T7B8 1368 aa18.67■□□□□ 0.58
PTCH1-213ENST00000546820 ANKRD26Q9UPS8 1709 aa18.66■□□□□ 0.58
PTCH1-213ENST00000546820 CSB-PGBD3P0DP91 1061 aa18.66■□□□□ 0.58
PTCH1-213ENST00000546820 RXRBP28702 533 aa18.66■□□□□ 0.58
PTCH1-213ENST00000546820 HOXC9P31274 260 aa18.66■□□□□ 0.58
PTCH1-213ENST00000546820 POLKQ9UBT6 870 aa18.66■□□□□ 0.58
PTCH1-213ENST00000546820 RBM6P78332 1123 aaKnown RBP18.65■□□□□ 0.58
PTCH1-213ENST00000546820 POTEAQ6S8J7 498 aa18.65■□□□□ 0.58
PTCH1-213ENST00000546820 GJD4Q96KN9 370 aaPredicted RBP18.65■□□□□ 0.58
PTCH1-213ENST00000546820 PLCH1Q4KWH8 1693 aa18.65■□□□□ 0.58
PTCH1-213ENST00000546820 CAMTA1Q9Y6Y1 1673 aa18.65■□□□□ 0.58
PTCH1-213ENST00000546820 ABCC6O95255 1503 aa18.64■□□□□ 0.58
PTCH1-213ENST00000546820 EMILIN1Q9Y6C2 1016 aa18.64■□□□□ 0.57
PTCH1-213ENST00000546820 RTL1A6NKG5 1358 aa18.64■□□□□ 0.57
PTCH1-213ENST00000546820 BLMP54132 1417 aaPredicted RBP18.64■□□□□ 0.57
PTCH1-213ENST00000546820 LTN1O94822 1766 aa18.63■□□□□ 0.57
PTCH1-213ENST00000546820 TOM1L2Q6ZVM7 507 aa18.63■□□□□ 0.57
PTCH1-213ENST00000546820 ANKRD24Q8TF21 1146 aa18.63■□□□□ 0.57
PTCH1-213ENST00000546820 FLT4P35916 1363 aa18.63■□□□□ 0.57
PTCH1-213ENST00000546820 ATRNO75882 1429 aa18.63■□□□□ 0.57
PTCH1-213ENST00000546820 MAP2P11137 1827 aaKnown RBP18.63■□□□□ 0.57
PTCH1-213ENST00000546820 RALBP1Q15311 655 aa18.62■□□□□ 0.57
PTCH1-213ENST00000546820 LARP1Q6PKG0 1096 aaKnown RBP18.62■□□□□ 0.57
PTCH1-213ENST00000546820 WDR17Q8IZU2 1322 aa18.62■□□□□ 0.57
PTCH1-213ENST00000546820 LMO7Q8WWI1 1683 aa18.62■□□□□ 0.57
PTCH1-213ENST00000546820 COL18A1P39060 1754 aa18.62■□□□□ 0.57
PTCH1-213ENST00000546820 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.61■□□□□ 0.57
PTCH1-213ENST00000546820 HSP90AB2PQ58FF8 381 aa18.61■□□□□ 0.57
PTCH1-213ENST00000546820 LTV1Q96GA3 475 aaPredicted RBP18.61■□□□□ 0.57
PTCH1-213ENST00000546820 COL5A2P05997 1499 aaPredicted RBP18.6■□□□□ 0.57
PTCH1-213ENST00000546820 INSRP06213 1382 aa18.6■□□□□ 0.57
PTCH1-213ENST00000546820 SPATA31A5Q5VU36 1347 aa18.6■□□□□ 0.57
PTCH1-213ENST00000546820 SPATA31A7Q8IWB4 1347 aa18.6■□□□□ 0.57
PTCH1-213ENST00000546820 MTHFSP49914 203 aa18.6■□□□□ 0.57
PTCH1-213ENST00000546820 NLRP2Q9NX02 1062 aa18.6■□□□□ 0.57
PTCH1-213ENST00000546820 THRAP3Q9Y2W1 955 aaKnown RBP18.6■□□□□ 0.57
PTCH1-213ENST00000546820 ERBB3P21860 1342 aa18.59■□□□□ 0.57
PTCH1-213ENST00000546820 CARD10Q9BWT7 1032 aa18.59■□□□□ 0.57
PTCH1-213ENST00000546820 USP35Q9P2H5 1018 aa18.59■□□□□ 0.57
PTCH1-213ENST00000546820 CRB1P82279 1406 aa18.58■□□□□ 0.57
PTCH1-213ENST00000546820 SMG6Q86US8 1419 aaKnown RBP18.58■□□□□ 0.57
PTCH1-213ENST00000546820 SPATA31A1Q5TZJ5 1347 aa18.58■□□□□ 0.57
PTCH1-213ENST00000546820 TCP11L2Q8N4U5 519 aa18.58■□□□□ 0.56
PTCH1-213ENST00000546820 RGPD5Q99666 1765 aa18.58■□□□□ 0.56
PTCH1-213ENST00000546820 NRAPQ86VF7 1730 aa18.57■□□□□ 0.56
PTCH1-213ENST00000546820 PPP2R1AP30153 589 aa18.56■□□□□ 0.56
PTCH1-213ENST00000546820 CFAP53Q96M91 514 aa18.56■□□□□ 0.56
PTCH1-213ENST00000546820 ONECUT3O60422 494 aaPredicted RBP18.55■□□□□ 0.56
PTCH1-213ENST00000546820 BARGINQ6ZT62 677 aa18.55■□□□□ 0.56
PTCH1-213ENST00000546820 PARD3Q8TEW0 1356 aa18.55■□□□□ 0.56
PTCH1-213ENST00000546820 A0A0G2JS52 829 aa18.54■□□□□ 0.56
PTCH1-213ENST00000546820 MYT1Q01538 1121 aa18.54■□□□□ 0.56
PTCH1-213ENST00000546820 FAM98CQ17RN3 349 aaKnown RBP18.54■□□□□ 0.56
PTCH1-213ENST00000546820 CDCA7Q9BWT1 371 aaPredicted RBP18.53■□□□□ 0.56
PTCH1-213ENST00000546820 ANP32CO43423 234 aa18.52■□□□□ 0.56
PTCH1-213ENST00000546820 EIF4A2Q14240 407 aaKnown RBP18.52■□□□□ 0.56
PTCH1-213ENST00000546820 PRKRIP1Q9H875 184 aaPredicted RBP18.52■□□□□ 0.56
PTCH1-213ENST00000546820 CDK12Q9NYV4 1490 aaPredicted RBP18.52■□□□□ 0.55
PTCH1-213ENST00000546820 PEAK1Q9H792 1746 aa18.52■□□□□ 0.55
PTCH1-213ENST00000546820 DIAPH1O60610 1272 aaKnown RBP18.51■□□□□ 0.55
PTCH1-213ENST00000546820 NBPF6Q5VWK0 638 aa18.51■□□□□ 0.55
PTCH1-213ENST00000546820 SEPT12Q8IYM1 358 aa18.51■□□□□ 0.55
PTCH1-213ENST00000546820 NBPF4Q96M43 638 aa18.51■□□□□ 0.55
PTCH1-213ENST00000546820 MYBBP1AQ9BQG0 1328 aaKnown RBP18.49■□□□□ 0.55
PTCH1-213ENST00000546820 IL2RBP14784 551 aa18.49■□□□□ 0.55
PTCH1-213ENST00000546820 EYA1Q99502 592 aa18.49■□□□□ 0.55
PTCH1-213ENST00000546820 NUDCQ9Y266 331 aa18.49■□□□□ 0.55
PTCH1-213ENST00000546820 GLI3P10071 1580 aa18.49■□□□□ 0.55
PTCH1-213ENST00000546820 FAM208AQ9UK61 1670 aaKnown RBP18.48■□□□□ 0.55
PTCH1-213ENST00000546820 EXOC5O00471 708 aa18.47■□□□□ 0.55
PTCH1-213ENST00000546820 IL13P35225 146 aa18.47■□□□□ 0.55
PTCH1-213ENST00000546820 RAPGEF4Q8WZA2 1011 aa18.47■□□□□ 0.55
PTCH1-213ENST00000546820 PDE3BQ13370 1112 aa18.46■□□□□ 0.55
PTCH1-213ENST00000546820 TATP17735 454 aaPredicted RBP18.45■□□□□ 0.54
PTCH1-213ENST00000546820 DDB1Q16531 1140 aa18.45■□□□□ 0.54
PTCH1-213ENST00000546820 USHBP1Q8N6Y0 703 aa18.45■□□□□ 0.54
PTCH1-213ENST00000546820 U2SURPO15042 1029 aaKnown RBP18.44■□□□□ 0.54
PTCH1-213ENST00000546820 ILDR2Q71H61 639 aa18.43■□□□□ 0.54
PTCH1-213ENST00000546820 KRT27Q7Z3Y8 459 aa18.43■□□□□ 0.54
PTCH1-213ENST00000546820 IGSF1Q8N6C5 1336 aa18.43■□□□□ 0.54
PTCH1-213ENST00000546820 RGS12O14924 1447 aa18.42■□□□□ 0.54
PTCH1-213ENST00000546820 SULT6B1Q6IMI4 303 aa18.42■□□□□ 0.54
PTCH1-213ENST00000546820 RGPD2P0DJD1 1756 aa18.41■□□□□ 0.54
PTCH1-213ENST00000546820 ZCRB1Q8TBF4 217 aaKnown RBP18.4■□□□□ 0.54
PTCH1-213ENST00000546820 DISP2A7MBM2 1401 aa18.4■□□□□ 0.54
PTCH1-213ENST00000546820 U2AF1L5P0DN76 240 aaPredicted RBP18.39■□□□□ 0.53
PTCH1-213ENST00000546820 U2AF1Q01081 240 aaKnown RBP eCLIP18.39■□□□□ 0.53
PTCH1-213ENST00000546820 SPG7Q9UQ90 795 aa18.39■□□□□ 0.53
PTCH1-213ENST00000546820 DIEXFQ68CQ4 756 aaKnown RBP18.38■□□□□ 0.53
PTCH1-213ENST00000546820 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.38■□□□□ 0.53
PTCH1-213ENST00000546820 NCAPD2Q15021 1401 aa18.38■□□□□ 0.53
PTCH1-213ENST00000546820 THSD7AQ9UPZ6 1657 aa18.38■□□□□ 0.53
PTCH1-213ENST00000546820 HMOX1P09601 288 aa18.37■□□□□ 0.53
PTCH1-213ENST00000546820 PLEKHO1Q53GL0 409 aaPredicted RBP18.37■□□□□ 0.53
PTCH1-213ENST00000546820 DDX54Q8TDD1 881 aaKnown RBP18.37■□□□□ 0.53
PTCH1-213ENST00000546820 PNNQ9H307 717 aaKnown RBP18.37■□□□□ 0.53
PTCH1-213ENST00000546820 COL3A1P02461 1466 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms