RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 PEAK1Q9H792 1746 aa18.63■□□□□ 0.57
SCAF11-208ENST00000546534 ZBTB7CA1YPR0 619 aa18.63■□□□□ 0.57
SCAF11-208ENST00000546534 PTF1AQ7RTS3 328 aa18.63■□□□□ 0.57
SCAF11-208ENST00000546534 PDGFDQ9GZP0 370 aaPredicted RBP18.62■□□□□ 0.57
SCAF11-208ENST00000546534 DDB1Q16531 1140 aa18.61■□□□□ 0.57
SCAF11-208ENST00000546534 BCL11BQ9C0K0 894 aaPredicted RBP18.61■□□□□ 0.57
SCAF11-208ENST00000546534 PPIP5K1Q6PFW1 1433 aa18.6■□□□□ 0.57
SCAF11-208ENST00000546534 AATKQ6ZMQ8 1374 aa18.6■□□□□ 0.57
SCAF11-208ENST00000546534 SRPK2P78362 688 aaKnown RBP18.6■□□□□ 0.57
SCAF11-208ENST00000546534 PROM2Q8N271 834 aa18.6■□□□□ 0.57
SCAF11-208ENST00000546534 RGPD3A6NKT7 1758 aaPredicted RBP18.6■□□□□ 0.57
SCAF11-208ENST00000546534 RGPD4Q7Z3J3 1758 aa18.6■□□□□ 0.57
SCAF11-208ENST00000546534 ZBTB7AO95365 584 aa18.59■□□□□ 0.57
SCAF11-208ENST00000546534 TOM1L2Q6ZVM7 507 aa18.59■□□□□ 0.57
SCAF11-208ENST00000546534 CASZ1Q86V15 1759 aa18.59■□□□□ 0.57
SCAF11-208ENST00000546534 LRRC37A3O60309 1634 aa18.59■□□□□ 0.57
SCAF11-208ENST00000546534 PTGER2P43116 358 aa18.58■□□□□ 0.56
SCAF11-208ENST00000546534 NLRP6P59044 892 aa18.58■□□□□ 0.56
SCAF11-208ENST00000546534 CABP2Q9NPB3 220 aa18.58■□□□□ 0.56
SCAF11-208ENST00000546534 BRD4O60885 1362 aaPredicted RBP18.57■□□□□ 0.56
SCAF11-208ENST00000546534 NBPF1Q3BBV0 1214 aa18.57■□□□□ 0.56
SCAF11-208ENST00000546534 MARCH10Q8NA82 808 aaPredicted RBP18.57■□□□□ 0.56
SCAF11-208ENST00000546534 ATF5Q9Y2D1 282 aaPredicted RBP18.57■□□□□ 0.56
SCAF11-208ENST00000546534 SBF2Q86WG5 1849 aa18.57■□□□□ 0.56
SCAF11-208ENST00000546534 ZNF784Q8NCA9 323 aaPredicted RBP18.56■□□□□ 0.56
SCAF11-208ENST00000546534 AXIN2Q9Y2T1 843 aa18.56■□□□□ 0.56
SCAF11-208ENST00000546534 SLIT3O75094 1523 aa18.55■□□□□ 0.56
SCAF11-208ENST00000546534 WDR17Q8IZU2 1322 aa18.54■□□□□ 0.56
SCAF11-208ENST00000546534 CABP1Q9NZU7 370 aa18.54■□□□□ 0.56
SCAF11-208ENST00000546534 BCL9O00512 1426 aa18.54■□□□□ 0.56
SCAF11-208ENST00000546534 USP6P35125 1406 aa18.54■□□□□ 0.56
SCAF11-208ENST00000546534 CENPJQ9HC77 1338 aaPredicted RBP18.53■□□□□ 0.56
SCAF11-208ENST00000546534 TXNRD1Q16881 649 aa18.53■□□□□ 0.56
SCAF11-208ENST00000546534 MYOM1P52179 1685 aa18.53■□□□□ 0.56
SCAF11-208ENST00000546534 SYT17Q9BSW7 474 aa18.52■□□□□ 0.56
SCAF11-208ENST00000546534 CDCA7Q9BWT1 371 aaPredicted RBP18.52■□□□□ 0.56
SCAF11-208ENST00000546534 FHDC1Q9C0D6 1143 aaPredicted RBP18.52■□□□□ 0.56
SCAF11-208ENST00000546534 STK32BQ9NY57 414 aa18.52■□□□□ 0.56
SCAF11-208ENST00000546534 COL18A1P39060 1754 aa18.52■□□□□ 0.55
SCAF11-208ENST00000546534 KIAA1210Q9ULL0 1709 aa18.52■□□□□ 0.55
SCAF11-208ENST00000546534 SLC15A2Q16348 729 aa18.51■□□□□ 0.55
SCAF11-208ENST00000546534 ARHGEF25Q86VW2 580 aa18.49■□□□□ 0.55
SCAF11-208ENST00000546534 CARD10Q9BWT7 1032 aa18.49■□□□□ 0.55
SCAF11-208ENST00000546534 CPSF1Q10570 1443 aaKnown RBP18.49■□□□□ 0.55
SCAF11-208ENST00000546534 EXOC5O00471 708 aa18.48■□□□□ 0.55
SCAF11-208ENST00000546534 CSB-PGBD3P0DP91 1061 aa18.48■□□□□ 0.55
SCAF11-208ENST00000546534 SGIP1Q9BQI5 828 aa18.48■□□□□ 0.55
SCAF11-208ENST00000546534 MTFR1LQ9H019 292 aa18.48■□□□□ 0.55
SCAF11-208ENST00000546534 WNK3Q9BYP7 1800 aa18.48■□□□□ 0.55
SCAF11-208ENST00000546534 PIK3C2AO00443 1686 aa18.47■□□□□ 0.55
SCAF11-208ENST00000546534 SOX12O15370 315 aa18.46■□□□□ 0.55
SCAF11-208ENST00000546534 AKAP12Q02952 1782 aa18.45■□□□□ 0.54
SCAF11-208ENST00000546534 SENP3-EIF4A1A0A087X0R7 540 aa18.44■□□□□ 0.54
SCAF11-208ENST00000546534 KCNH5Q8NCM2 988 aa18.44■□□□□ 0.54
SCAF11-208ENST00000546534 TTC21BQ7Z4L5 1316 aa18.44■□□□□ 0.54
SCAF11-208ENST00000546534 ARXQ96QS3 562 aa18.43■□□□□ 0.54
SCAF11-208ENST00000546534 QRICH2Q9H0J4 1663 aa18.43■□□□□ 0.54
SCAF11-208ENST00000546534 C1QTNF8P60827 252 aa18.42■□□□□ 0.54
SCAF11-208ENST00000546534 ACSBG1Q96GR2 724 aa18.42■□□□□ 0.54
SCAF11-208ENST00000546534 CCDC7Q96M83 1385 aa18.42■□□□□ 0.54
SCAF11-208ENST00000546534 TNS2Q63HR2 1409 aa18.41■□□□□ 0.54
SCAF11-208ENST00000546534 RGPD5Q99666 1765 aa18.41■□□□□ 0.54
SCAF11-208ENST00000546534 ZNF692Q9BU19 519 aaPredicted RBP18.41■□□□□ 0.54
SCAF11-208ENST00000546534 EVC2Q86UK5 1308 aa18.41■□□□□ 0.54
SCAF11-208ENST00000546534 UTRNP46939 3433 aa18.4■□□□□ 0.54
SCAF11-208ENST00000546534 TTC21AQ8NDW8 1320 aa18.39■□□□□ 0.53
SCAF11-208ENST00000546534 NFAT5O94916 1531 aa18.39■□□□□ 0.53
SCAF11-208ENST00000546534 TRPM1Q7Z4N2 1603 aa18.38■□□□□ 0.53
SCAF11-208ENST00000546534 MAP3K5Q99683 1374 aa18.38■□□□□ 0.53
SCAF11-208ENST00000546534 NHSQ6T4R5 1651 aa18.38■□□□□ 0.53
SCAF11-208ENST00000546534 ZNF827Q17R98 1081 aa18.37■□□□□ 0.53
SCAF11-208ENST00000546534 PAPPAQ13219 1627 aa18.36■□□□□ 0.53
SCAF11-208ENST00000546534 CHD4Q14839 1912 aa18.35■□□□□ 0.53
SCAF11-208ENST00000546534 GPR162Q16538 588 aa18.35■□□□□ 0.53
SCAF11-208ENST00000546534 SPINK5Q9NQ38 1064 aaPredicted RBP18.35■□□□□ 0.53
SCAF11-208ENST00000546534 LRRC4BQ9NT99 713 aa18.35■□□□□ 0.53
SCAF11-208ENST00000546534 NLRP2Q9NX02 1062 aa18.35■□□□□ 0.53
SCAF11-208ENST00000546534 ABCC6O95255 1503 aa18.34■□□□□ 0.53
SCAF11-208ENST00000546534 KTN1Q86UP2 1357 aaKnown RBP18.34■□□□□ 0.53
SCAF11-208ENST00000546534 ERBB3P21860 1342 aa18.33■□□□□ 0.53
SCAF11-208ENST00000546534 IL2RBP14784 551 aa18.33■□□□□ 0.52
SCAF11-208ENST00000546534 KLHL34Q8N239 644 aa18.31■□□□□ 0.52
SCAF11-208ENST00000546534 L3MBTL2Q969R5 705 aa18.31■□□□□ 0.52
SCAF11-208ENST00000546534 AKT1S1Q96B36 256 aa18.31■□□□□ 0.52
SCAF11-208ENST00000546534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.3■□□□□ 0.52
SCAF11-208ENST00000546534 BTAF1O14981 1849 aa18.3■□□□□ 0.52
SCAF11-208ENST00000546534 GIGYF1O75420 1035 aaPredicted RBP18.29■□□□□ 0.52
SCAF11-208ENST00000546534 PELP1Q8IZL8 1130 aaKnown RBP18.29■□□□□ 0.52
SCAF11-208ENST00000546534 SLC16A10Q8TF71 515 aa18.29■□□□□ 0.52
SCAF11-208ENST00000546534 ZNF219Q9P2Y4 722 aaPredicted RBP18.29■□□□□ 0.52
SCAF11-208ENST00000546534 USP31Q70CQ4 1352 aa18.29■□□□□ 0.52
SCAF11-208ENST00000546534 CAPN15O75808 1086 aa18.28■□□□□ 0.52
SCAF11-208ENST00000546534 NME9Q86XW9 330 aa18.28■□□□□ 0.52
SCAF11-208ENST00000546534 ANKRD24Q8TF21 1146 aa18.28■□□□□ 0.52
SCAF11-208ENST00000546534 PNPLA7Q6ZV29 1317 aa18.27■□□□□ 0.52
SCAF11-208ENST00000546534 POLD1P28340 1107 aa18.27■□□□□ 0.52
SCAF11-208ENST00000546534 SLC27A3Q5K4L6 730 aa18.26■□□□□ 0.51
SCAF11-208ENST00000546534 KCNQ4P56696 695 aa18.25■□□□□ 0.51
SCAF11-208ENST00000546534 NLGN2Q8NFZ4 835 aa18.25■□□□□ 0.51
SCAF11-208ENST00000546534 DDX54Q8TDD1 881 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms