RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SHPRH	Q149N8	1683 aa		13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	DIAPH1	O60610	1272 aa	Known RBP	13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	TOM1L2	Q6ZVM7	507 aa		13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	UNC5CL	Q8IV45	518 aa		13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	NLRP2	Q9NX02	1062 aa		13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	NFAT5	O94916	1531 aa		13.63	□□□□□ -0.23
CPSF7-221	ENST00000543545	RTL1	A6NKG5	1358 aa		13.62	□□□□□ -0.23
CPSF7-221	ENST00000543545	KIF24	Q5T7B8	1368 aa		13.62	□□□□□ -0.23
CPSF7-221	ENST00000543545	MIER1	Q8N108	512 aa		13.62	□□□□□ -0.23
CPSF7-221	ENST00000543545	NUDC	Q9Y266	331 aa		13.62	□□□□□ -0.23
CPSF7-221	ENST00000543545	KIF20B	Q96Q89	1820 aa		13.62	□□□□□ -0.23
CPSF7-221	ENST00000543545	INSR	P06213	1382 aa		13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	U2SURP	O15042	1029 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	EIF4A2	Q14240	407 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	ZNF772	Q68DY9	489 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	LARP1	Q6PKG0	1096 aa	Known RBP	13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	MRS2	Q9HD23	443 aa		13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	USP35	Q9P2H5	1018 aa		13.61	□□□□□ -0.23
CPSF7-221	ENST00000543545	SMG6	Q86US8	1419 aa	Known RBP	13.6	□□□□□ -0.23
CPSF7-221	ENST00000543545	ERBB3	P21860	1342 aa		13.6	□□□□□ -0.23
CPSF7-221	ENST00000543545	BLM	P54132	1417 aa	Predicted RBP	13.59	□□□□□ -0.23
CPSF7-221	ENST00000543545	IL13	P35225	146 aa		13.59	□□□□□ -0.23
CPSF7-221	ENST00000543545	QTRT2	Q9H974	415 aa	Known RBP	13.59	□□□□□ -0.23
CPSF7-221	ENST00000543545	TRPC5	Q9UL62	973 aa	Predicted RBP	13.59	□□□□□ -0.23
CPSF7-221	ENST00000543545	WDR17	Q8IZU2	1322 aa		13.59	□□□□□ -0.23
CPSF7-221	ENST00000543545	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.58	□□□□□ -0.24
CPSF7-221	ENST00000543545	VPS72	Q15906	364 aa		13.58	□□□□□ -0.24
CPSF7-221	ENST00000543545	NBPF6	Q5VWK0	638 aa		13.58	□□□□□ -0.24
CPSF7-221	ENST00000543545	NBPF4	Q96M43	638 aa		13.58	□□□□□ -0.24
CPSF7-221	ENST00000543545	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	WDR43	Q15061	677 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	CCDC184	Q52MB2	194 aa		13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	USHBP1	Q8N6Y0	703 aa		13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	EYA1	Q99502	592 aa		13.57	□□□□□ -0.24
CPSF7-221	ENST00000543545	USP54	Q70EL1	1684 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	CAMTA1	Q9Y6Y1	1673 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	SLIT2	O94813	1529 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545		A0A0G2JS52	829 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	MYT1	Q01538	1121 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	CARD10	Q9BWT7	1032 aa		13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	MARF1	Q9Y4F3	1742 aa	Known RBP	13.56	□□□□□ -0.24
CPSF7-221	ENST00000543545	COL5A2	P05997	1499 aa	Predicted RBP	13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	BCL9L	Q86UU0	1499 aa		13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	CCER2	I3L3R5	266 aa		13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	SULT6B1	Q6IMI4	303 aa		13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	TCP11L2	Q8N4U5	519 aa		13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	GJD4	Q96KN9	370 aa	Predicted RBP	13.55	□□□□□ -0.24
CPSF7-221	ENST00000543545	ANKRD26	Q9UPS8	1709 aa		13.54	□□□□□ -0.24
CPSF7-221	ENST00000543545	HMOX1	P09601	288 aa		13.54	□□□□□ -0.24
CPSF7-221	ENST00000543545	SPATA31A1	Q5TZJ5	1347 aa		13.54	□□□□□ -0.24
CPSF7-221	ENST00000543545	SPATA31A5	Q5VU36	1347 aa		13.54	□□□□□ -0.24
CPSF7-221	ENST00000543545	SPATA31A7	Q8IWB4	1347 aa		13.54	□□□□□ -0.24
CPSF7-221	ENST00000543545	CRYBG1	Q9Y4K1	1723 aa		13.53	□□□□□ -0.24
CPSF7-221	ENST00000543545	COL14A1	Q05707	1796 aa	Known RBP	13.53	□□□□□ -0.24
CPSF7-221	ENST00000543545	RAPGEF4	Q8WZA2	1011 aa		13.53	□□□□□ -0.24
CPSF7-221	ENST00000543545	CRB1	P82279	1406 aa		13.53	□□□□□ -0.24
CPSF7-221	ENST00000543545	ABCA3	Q99758	1704 aa		13.53	□□□□□ -0.24
CPSF7-221	ENST00000543545	TAT	P17735	454 aa	Predicted RBP	13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	RXRB	P28702	533 aa		13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	FAM98C	Q17RN3	349 aa	Known RBP	13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	AEBP1	Q8IUX7	1158 aa		13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	FAM9B	Q8IZU0	186 aa		13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	RGS17	Q9UGC6	210 aa	Predicted RBP	13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	THRAP3	Q9Y2W1	955 aa	Known RBP	13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	ABCC6	O95255	1503 aa		13.52	□□□□□ -0.25
CPSF7-221	ENST00000543545	IGSF1	Q8N6C5	1336 aa		13.51	□□□□□ -0.25
CPSF7-221	ENST00000543545	NEFM	P07197	916 aa		13.51	□□□□□ -0.25
CPSF7-221	ENST00000543545	IL2RB	P14784	551 aa		13.51	□□□□□ -0.25
CPSF7-221	ENST00000543545	RBM6	P78332	1123 aa	Known RBP	13.51	□□□□□ -0.25
CPSF7-221	ENST00000543545	POTEA	Q6S8J7	498 aa		13.51	□□□□□ -0.25
CPSF7-221	ENST00000543545	PEAK1	Q9H792	1746 aa		13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	ATRN	O75882	1429 aa		13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	PNISR	Q8TF01	805 aa	Known RBP	13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	PNN	Q9H307	717 aa	Known RBP	13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	ADAMTS8	Q9UP79	889 aa		13.5	□□□□□ -0.25
CPSF7-221	ENST00000543545	FCHSD2	O94868	740 aa		13.49	□□□□□ -0.25
CPSF7-221	ENST00000543545	PRKAR2B	P31323	418 aa		13.49	□□□□□ -0.25
CPSF7-221	ENST00000543545	BARGIN	Q6ZT62	677 aa		13.49	□□□□□ -0.25
CPSF7-221	ENST00000543545	COL3A1	P02461	1466 aa	Predicted RBP	13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	MAP2	P11137	1827 aa	Known RBP	13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	LMO7	Q8WWI1	1683 aa		13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	EXOC5	O00471	708 aa		13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	LTN1	O94822	1766 aa		13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	COL18A1	P39060	1754 aa		13.48	□□□□□ -0.25
CPSF7-221	ENST00000543545	CCDC146	Q8IYE0	955 aa		13.47	□□□□□ -0.25
CPSF7-221	ENST00000543545	SEPT12	Q8IYM1	358 aa		13.47	□□□□□ -0.25
CPSF7-221	ENST00000543545	RSPH6A	Q9H0K4	717 aa		13.47	□□□□□ -0.25
CPSF7-221	ENST00000543545	MAPK8IP3	Q9UPT6	1336 aa		13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	PDE3B	Q13370	1112 aa		13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	DDB1	Q16531	1140 aa		13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	ZCRB1	Q8TBF4	217 aa	Known RBP	13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	DDX54	Q8TDD1	881 aa	Known RBP	13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	SPG7	Q9UQ90	795 aa		13.46	□□□□□ -0.25
CPSF7-221	ENST00000543545	PLCH1	Q4KWH8	1693 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms