RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 TSEN34Q9BSV6 310 aaKnown RBP9.64□□□□□ -0.87
USP47-211ENST00000531513 FKBPLQ9UIM3 349 aa9.64□□□□□ -0.87
USP47-211ENST00000531513 PPFIA3O75145 1194 aa9.63□□□□□ -0.87
USP47-211ENST00000531513 PPP1R26Q5T8A7 1209 aaPredicted RBP9.63□□□□□ -0.87
USP47-211ENST00000531513 ARHGAP9Q9BRR9 750 aa9.63□□□□□ -0.87
USP47-211ENST00000531513 GPBP1L1Q9HC44 474 aaPredicted RBP9.63□□□□□ -0.87
USP47-211ENST00000531513 NR6A1Q15406 480 aa9.62□□□□□ -0.87
USP47-211ENST00000531513 SKIV2LQ15477 1246 aaKnown RBP9.62□□□□□ -0.87
USP47-211ENST00000531513 SH3D19Q5HYK7 790 aa9.62□□□□□ -0.87
USP47-211ENST00000531513 PDXDC2PQ6P474 469 aa9.62□□□□□ -0.87
USP47-211ENST00000531513 PROCA1Q8NCQ7 364 aaPredicted RBP9.62□□□□□ -0.87
USP47-211ENST00000531513 SLC10A4Q96EP9 437 aa9.62□□□□□ -0.87
USP47-211ENST00000531513 CBLBQ13191 982 aa9.61□□□□□ -0.87
USP47-211ENST00000531513 KDM4CQ9H3R0 1056 aa9.61□□□□□ -0.87
USP47-211ENST00000531513 PGPEP1Q9NXJ5 209 aa9.61□□□□□ -0.87
USP47-211ENST00000531513 TTLL8A6PVC2 850 aa9.6□□□□□ -0.87
USP47-211ENST00000531513 SUZ12Q15022 739 aaKnown RBP9.6□□□□□ -0.87
USP47-211ENST00000531513 KCTD15Q96SI1 283 aaPredicted RBP9.6□□□□□ -0.87
USP47-211ENST00000531513 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP47-211ENST00000531513 ZC3H4Q9UPT8 1303 aaKnown RBP9.59□□□□□ -0.87
USP47-211ENST00000531513 Q6ZVU0 165 aa9.59□□□□□ -0.87
USP47-211ENST00000531513 FAM117AQ9C073 453 aa9.59□□□□□ -0.87
USP47-211ENST00000531513 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.58□□□□□ -0.88
USP47-211ENST00000531513 PPP2R2DQ66LE6 453 aa9.58□□□□□ -0.88
USP47-211ENST00000531513 ZBTB33Q86T24 672 aa9.58□□□□□ -0.88
USP47-211ENST00000531513 OCSTAMPQ9BR26 566 aa9.58□□□□□ -0.88
USP47-211ENST00000531513 CDV3Q9UKY7 258 aaKnown RBP9.58□□□□□ -0.88
USP47-211ENST00000531513 AP1G2O75843 785 aa9.56□□□□□ -0.88
USP47-211ENST00000531513 PTSQ03393 145 aa9.56□□□□□ -0.88
USP47-211ENST00000531513 INTS6LQ5JSJ4 861 aaKnown RBP9.56□□□□□ -0.88
USP47-211ENST00000531513 DDRGK1Q96HY6 314 aa9.56□□□□□ -0.88
USP47-211ENST00000531513 ATP1B4Q9UN42 357 aaPredicted RBP9.56□□□□□ -0.88
USP47-211ENST00000531513 FIGNL2A6NMB9 653 aa9.55□□□□□ -0.88
USP47-211ENST00000531513 SPINT1O43278 529 aa9.55□□□□□ -0.88
USP47-211ENST00000531513 GSK3AP49840 483 aa9.55□□□□□ -0.88
USP47-211ENST00000531513 PTK2Q05397 1052 aa9.54□□□□□ -0.88
USP47-211ENST00000531513 DHX9Q08211 1270 aaKnown RBP9.54□□□□□ -0.88
USP47-211ENST00000531513 ADAM32Q8TC27 787 aa9.54□□□□□ -0.88
USP47-211ENST00000531513 EPS8L1Q8TE68 723 aa9.54□□□□□ -0.88
USP47-211ENST00000531513 PRKCSHP14314 528 aaPredicted RBP9.53□□□□□ -0.88
USP47-211ENST00000531513 KRT76Q01546 638 aa9.53□□□□□ -0.88
USP47-211ENST00000531513 AGBL1Q96MI9 1066 aa9.53□□□□□ -0.88
USP47-211ENST00000531513 HMX1Q9NP08 348 aaPredicted RBP9.53□□□□□ -0.88
USP47-211ENST00000531513 GPSM3Q9Y4H4 160 aa9.53□□□□□ -0.88
USP47-211ENST00000531513 USP17L8P0C7I0 530 aa9.52□□□□□ -0.89
USP47-211ENST00000531513 GPR161Q8N6U8 529 aaKnown RBP9.52□□□□□ -0.89
USP47-211ENST00000531513 CTSOP43234 321 aaPredicted RBP9.51□□□□□ -0.89
USP47-211ENST00000531513 RELBQ01201 579 aa9.51□□□□□ -0.89
USP47-211ENST00000531513 KCNMA1Q12791 1236 aa9.5□□□□□ -0.89
USP47-211ENST00000531513 NBPF20Q3BBV1 942 aa9.5□□□□□ -0.89
USP47-211ENST00000531513 CCDC155Q8N6L0 562 aa9.5□□□□□ -0.89
USP47-211ENST00000531513 INSM2Q96T92 566 aaPredicted RBP9.5□□□□□ -0.89
USP47-211ENST00000531513 TMPRSS4Q9NRS4 437 aa9.5□□□□□ -0.89
USP47-211ENST00000531513 RAB15P59190 212 aa9.49□□□□□ -0.89
USP47-211ENST00000531513 ZNF784Q8NCA9 323 aaPredicted RBP9.48□□□□□ -0.89
USP47-211ENST00000531513 PNMA1Q8ND90 353 aa9.48□□□□□ -0.89
USP47-211ENST00000531513 CNTNAP3BQ96NU0 1288 aa9.48□□□□□ -0.89
USP47-211ENST00000531513 CNTNAP3Q9BZ76 1288 aa9.48□□□□□ -0.89
USP47-211ENST00000531513 POLMQ9NP87 494 aaPredicted RBP9.48□□□□□ -0.89
USP47-211ENST00000531513 SLC35F4A4IF30 521 aa9.47□□□□□ -0.89
USP47-211ENST00000531513 RFC5P40937 340 aa9.47□□□□□ -0.89
USP47-211ENST00000531513 NANOS1Q8WY41 292 aaKnown RBP9.47□□□□□ -0.89
USP47-211ENST00000531513 COL25A1Q9BXS0 654 aaPredicted RBP9.47□□□□□ -0.89
USP47-211ENST00000531513 ZNF395Q9H8N7 513 aaPredicted RBP9.47□□□□□ -0.89
USP47-211ENST00000531513 DZIP3Q86Y13 1208 aaKnown RBP9.46□□□□□ -0.9
USP47-211ENST00000531513 KCTD17Q8N5Z5 321 aa9.46□□□□□ -0.9
USP47-211ENST00000531513 RNF217Q8TC41 542 aa9.46□□□□□ -0.9
USP47-211ENST00000531513 ERVH48-1M5A8F1 160 aa9.45□□□□□ -0.9
USP47-211ENST00000531513 ADH1AP07327 375 aa9.45□□□□□ -0.9
USP47-211ENST00000531513 ITGA6P23229 1130 aa9.45□□□□□ -0.9
USP47-211ENST00000531513 RNFT1Q5M7Z0 435 aa9.45□□□□□ -0.9
USP47-211ENST00000531513 ESPNB1AK53 854 aa9.44□□□□□ -0.9
USP47-211ENST00000531513 LILRA1O75019 489 aa9.44□□□□□ -0.9
USP47-211ENST00000531513 ADD1P35611 737 aaKnown RBP9.43□□□□□ -0.9
USP47-211ENST00000531513 FOXD4L5Q5VV16 416 aaPredicted RBP9.43□□□□□ -0.9
USP47-211ENST00000531513 TRIM34Q9BYJ4 488 aa9.43□□□□□ -0.9
USP47-211ENST00000531513 SENP3-EIF4A1A0A087X0R7 540 aa9.42□□□□□ -0.9
USP47-211ENST00000531513 CDC14CA4D256 554 aa9.42□□□□□ -0.9
USP47-211ENST00000531513 VWA5B2Q8N398 1253 aa9.42□□□□□ -0.9
USP47-211ENST00000531513 KDF1Q8NAX2 398 aaPredicted RBP9.42□□□□□ -0.9
USP47-211ENST00000531513 PTGIRP43119 386 aa9.41□□□□□ -0.9
USP47-211ENST00000531513 SV2AQ7L0J3 742 aa9.4□□□□□ -0.9
USP47-211ENST00000531513 CYLDQ9NQC7 956 aa9.4□□□□□ -0.9
USP47-211ENST00000531513 ZNF385CQ66K41 422 aaPredicted RBP9.39□□□□□ -0.91
USP47-211ENST00000531513 TPRNQ4KMQ1 711 aa9.38□□□□□ -0.91
USP47-211ENST00000531513 SEPT12Q8IYM1 358 aa9.38□□□□□ -0.91
USP47-211ENST00000531513 PCMTD1Q96MG8 357 aaPredicted RBP9.38□□□□□ -0.91
USP47-211ENST00000531513 GOPCQ9HD26 462 aa9.38□□□□□ -0.91
USP47-211ENST00000531513 ADAMTS8Q9UP79 889 aa9.38□□□□□ -0.91
USP47-211ENST00000531513 SVOPQ8N4V2 548 aa9.37□□□□□ -0.91
USP47-211ENST00000531513 WHAMMQ8TF30 809 aa9.37□□□□□ -0.91
USP47-211ENST00000531513 ZBBXA8MT70 800 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 SLURP2P0DP57 97 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 TMEM259Q4ZIN3 620 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 LYSMD3Q7Z3D4 306 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 TMEM151AQ8N4L1 468 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 CUEDC1Q9NWM3 386 aaPredicted RBP9.36□□□□□ -0.91
USP47-211ENST00000531513 PCDHB9Q9Y5E1 797 aa9.36□□□□□ -0.91
USP47-211ENST00000531513 FBXO45P0C2W1 286 aa9.35□□□□□ -0.91
USP47-211ENST00000531513 RASSF7Q02833 373 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms