RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 AEBP2Q6ZN18 517 aaPredicted RBP28.46■■■□□ 2.15
USP47-211ENST00000531513 CHIC1Q5VXU3 224 aa26.83■■□□□ 1.89
USP47-211ENST00000531513 SENP3Q9H4L4 574 aaPredicted RBP24.26■■□□□ 1.47
USP47-211ENST00000531513 PHF23Q9BUL5 403 aaPredicted RBP23.9■■□□□ 1.42
USP47-211ENST00000531513 FOXD1Q16676 465 aa22.71■■□□□ 1.23
USP47-211ENST00000531513 POTEDQ86YR6 584 aa21.61■■□□□ 1.05
USP47-211ENST00000531513 PLPPR3Q6T4P5 718 aa21.45■■□□□ 1.02
USP47-211ENST00000531513 MSH5O43196 834 aa21.36■■□□□ 1.01
USP47-211ENST00000531513 PIAS4Q8N2W9 510 aaPredicted RBP21.06■□□□□ 0.96
USP47-211ENST00000531513 PPP6R1Q9UPN7 881 aa21■□□□□ 0.95
USP47-211ENST00000531513 ADRA2BP18089 450 aa20.94■□□□□ 0.94
USP47-211ENST00000531513 MAPK8IP2Q13387 824 aaPredicted RBP19.24■□□□□ 0.67
USP47-211ENST00000531513 DMRT2Q9Y5R5 561 aa19.21■□□□□ 0.67
USP47-211ENST00000531513 SCAF1Q9H7N4 1312 aaKnown RBP19.1■□□□□ 0.65
USP47-211ENST00000531513 PPP4R3CPQ6ZMV5 832 aa18.82■□□□□ 0.6
USP47-211ENST00000531513 CACNB1Q02641 598 aaPredicted RBP18.56■□□□□ 0.56
USP47-211ENST00000531513 CNKSR2Q8WXI2 1034 aa18.44■□□□□ 0.54
USP47-211ENST00000531513 HOXD11P31277 338 aaPredicted RBP18.39■□□□□ 0.53
USP47-211ENST00000531513 DCAF8L1A6NGE4 600 aa18.31■□□□□ 0.52
USP47-211ENST00000531513 RNF216Q9NWF9 866 aaPredicted RBP18.27■□□□□ 0.52
USP47-211ENST00000531513 RNF39Q9H2S5 420 aa18.24■□□□□ 0.51
USP47-211ENST00000531513 NCBP3Q53F19 620 aaKnown RBP18.09■□□□□ 0.49
USP47-211ENST00000531513 C1QBPQ07021 282 aaKnown RBP17.91■□□□□ 0.46
USP47-211ENST00000531513 NPM3O75607 178 aaKnown RBP17.86■□□□□ 0.45
USP47-211ENST00000531513 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
USP47-211ENST00000531513 KCNA4P22459 653 aa17.58■□□□□ 0.4
USP47-211ENST00000531513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.52■□□□□ 0.4
USP47-211ENST00000531513 U3KPZ7 1027 aaPredicted RBP17.19■□□□□ 0.34
USP47-211ENST00000531513 SLC4A2P04920 1241 aa17.05■□□□□ 0.32
USP47-211ENST00000531513 SPINK5Q9NQ38 1064 aaPredicted RBP16.93■□□□□ 0.3
USP47-211ENST00000531513 DSG3P32926 999 aa16.92■□□□□ 0.3
USP47-211ENST00000531513 CAPN15O75808 1086 aa16.88■□□□□ 0.29
USP47-211ENST00000531513 POTEHQ6S545 545 aa16.83■□□□□ 0.28
USP47-211ENST00000531513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
USP47-211ENST00000531513 APLP2Q06481 763 aa16.66■□□□□ 0.26
USP47-211ENST00000531513 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
USP47-211ENST00000531513 TRHP20396 242 aaPredicted RBP16.62■□□□□ 0.25
USP47-211ENST00000531513 SAMD1Q6SPF0 538 aaPredicted RBP16.59■□□□□ 0.25
USP47-211ENST00000531513 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
USP47-211ENST00000531513 ZNF219Q9P2Y4 722 aaPredicted RBP16.58■□□□□ 0.24
USP47-211ENST00000531513 ABCB7O75027 752 aa16.52■□□□□ 0.24
USP47-211ENST00000531513 MYCNP04198 464 aaPredicted RBP16.52■□□□□ 0.24
USP47-211ENST00000531513 FOXD4L1Q9NU39 408 aa16.38■□□□□ 0.21
USP47-211ENST00000531513 ZBTB22O15209 634 aa16.19■□□□□ 0.18
USP47-211ENST00000531513 POLA2Q14181 598 aa16.17■□□□□ 0.18
USP47-211ENST00000531513 ATF5Q9Y2D1 282 aaPredicted RBP16.16■□□□□ 0.18
USP47-211ENST00000531513 RBM42Q9BTD8 480 aaKnown RBP16.1■□□□□ 0.17
USP47-211ENST00000531513 CHRDL2Q6WN34 429 aa15.95■□□□□ 0.14
USP47-211ENST00000531513 ATXN8OSP0DMR3 200 aa15.84■□□□□ 0.13
USP47-211ENST00000531513 ZBTB12Q9Y330 459 aaPredicted RBP15.84■□□□□ 0.13
USP47-211ENST00000531513 OSCARQ8IYS5 282 aa15.7■□□□□ 0.1
USP47-211ENST00000531513 AKT1S1Q96B36 256 aa15.67■□□□□ 0.1
USP47-211ENST00000531513 SP7Q8TDD2 431 aaPredicted RBP15.58■□□□□ 0.08
USP47-211ENST00000531513 REM2Q8IYK8 340 aaPredicted RBP15.53■□□□□ 0.08
USP47-211ENST00000531513 PIP4P2Q8N4L2 257 aa15.5■□□□□ 0.07
USP47-211ENST00000531513 FBLN2P98095 1184 aa15.48■□□□□ 0.07
USP47-211ENST00000531513 CSRNP3Q8WYN3 585 aa15.46■□□□□ 0.07
USP47-211ENST00000531513 MKRN4PQ13434 485 aaPredicted RBP15.41■□□□□ 0.06
USP47-211ENST00000531513 PITPNM1O00562 1244 aa15.39■□□□□ 0.05
USP47-211ENST00000531513 SPDYE2BA6NHP3 402 aa15.36■□□□□ 0.05
USP47-211ENST00000531513 SPDYE6P0CI01 402 aa15.36■□□□□ 0.05
USP47-211ENST00000531513 SPDYE2Q495Y8 402 aa15.36■□□□□ 0.05
USP47-211ENST00000531513 FXR2P51116 673 aaKnown RBP eCLIP15.35■□□□□ 0.057e-6■■■■□ 23.7
USP47-211ENST00000531513 EHMT2Q96KQ7 1210 aa15.32■□□□□ 0.04
USP47-211ENST00000531513 HAX1O00165 279 aa15.26■□□□□ 0.03
USP47-211ENST00000531513 SSUH2Q9Y2M2 353 aa15.19■□□□□ 0.02
USP47-211ENST00000531513 ZNF692Q9BU19 519 aaPredicted RBP15.18■□□□□ 0.02
USP47-211ENST00000531513 EVX2Q03828 476 aa15.15■□□□□ 0.02
USP47-211ENST00000531513 SPDYE1Q8NFV5 336 aaPredicted RBP15.08■□□□□ 0
USP47-211ENST00000531513 CLEC11AQ9Y240 323 aa15.06■□□□□ 0
USP47-211ENST00000531513 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP47-211ENST00000531513 PRKAR2AP13861 404 aaKnown RBP14.94□□□□□ -0.02
USP47-211ENST00000531513 C19orf67A6NJJ6 358 aa14.88□□□□□ -0.03
USP47-211ENST00000531513 PRR29P0C7W0 189 aa14.81□□□□□ -0.04
USP47-211ENST00000531513 CHADLQ6NUI6 762 aa14.79□□□□□ -0.04
USP47-211ENST00000531513 GABBR2O75899 941 aa14.73□□□□□ -0.05
USP47-211ENST00000531513 SPDYE4A6NLX3 237 aa14.69□□□□□ -0.06
USP47-211ENST00000531513 LHX8Q68G74 356 aa14.59□□□□□ -0.07
USP47-211ENST00000531513 FARP1Q9Y4F1 1045 aaPredicted RBP14.55□□□□□ -0.08
USP47-211ENST00000531513 STAG3Q9UJ98 1225 aa14.54□□□□□ -0.08
USP47-211ENST00000531513 CREBZFQ9NS37 354 aa14.48□□□□□ -0.09
USP47-211ENST00000531513 POTEIP0CG38 1075 aa14.47□□□□□ -0.09
USP47-211ENST00000531513 CD44P16070 742 aaKnown RBP14.47□□□□□ -0.09
USP47-211ENST00000531513 PROM2Q8N271 834 aa14.36□□□□□ -0.11
USP47-211ENST00000531513 CLCN6P51797 869 aa14.32□□□□□ -0.12
USP47-211ENST00000531513 ZRANB1Q9UGI0 708 aa14.27□□□□□ -0.13
USP47-211ENST00000531513 ZNF579Q8NAF0 562 aaKnown RBP14.25□□□□□ -0.13
USP47-211ENST00000531513 MNX1P50219 401 aaPredicted RBP14.24□□□□□ -0.13
USP47-211ENST00000531513 NPM1P06748 294 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP47-211ENST00000531513 DCBLD2Q96PD2 775 aa14.18□□□□□ -0.14
USP47-211ENST00000531513 PAK3O75914 559 aaPredicted RBP14.14□□□□□ -0.15
USP47-211ENST00000531513 PHF12Q96QT6 1004 aa14.11□□□□□ -0.15
USP47-211ENST00000531513 GALR2O43603 387 aaPredicted RBP14.09□□□□□ -0.15
USP47-211ENST00000531513 FKBP8Q14318 412 aa14.03□□□□□ -0.16
USP47-211ENST00000531513 OTUD5Q96G74 571 aa14□□□□□ -0.17
USP47-211ENST00000531513 POTEB2H3BUK9 544 aa13.99□□□□□ -0.17
USP47-211ENST00000531513 MIER1Q8N108 512 aa13.98□□□□□ -0.17
USP47-211ENST00000531513 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
USP47-211ENST00000531513 TSPYL2Q9H2G4 693 aaPredicted RBP13.96□□□□□ -0.17
USP47-211ENST00000531513 PLSCR2Q9NRY7 297 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms