RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 PNMA3Q9UL41 463 aa6.12□□□□□ -1.43
CD44-213ENST00000525209 CCDC194A0A1B0GVG4 234 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 HMGB1P1B2RPK0 211 aaPredicted RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 SCAMP3O14828 347 aaKnown RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 SPTLC1O15269 473 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 IBSPP21815 317 aaPredicted RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 SOX11P35716 441 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 RALBP1Q15311 655 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 PADI6Q6TGC4 694 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 TBC1D9Q6ZT07 1266 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 NUDT18Q6ZVK8 323 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 SAMD7Q7Z3H4 446 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 APBB1IPQ7Z5R6 666 aaPredicted RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 SLC43A3Q8NBI5 491 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 DHX38Q92620 1227 aaKnown RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 TATDN2Q93075 761 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 ARMC5Q96C12 935 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 CCDC136Q96JN2 1154 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 NPDC1Q9NQX5 325 aaPredicted RBP6.11□□□□□ -1.43
CD44-213ENST00000525209 PRKAG2Q9UGJ0 569 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 FAN1Q9Y2M0 1017 aa6.11□□□□□ -1.43
CD44-213ENST00000525209 NLGN1Q8N2Q7 840 aa6.1□□□□□ -1.43
CD44-213ENST00000525209 CERKQ8TCT0 537 aa6.1□□□□□ -1.43
CD44-213ENST00000525209 TINF2Q9BSI4 451 aa6.1□□□□□ -1.43
CD44-213ENST00000525209 TERF2IPQ9NYB0 399 aa6.1□□□□□ -1.43
CD44-213ENST00000525209 SLAIN2Q9P270 581 aa6.1□□□□□ -1.43
CD44-213ENST00000525209 NOP58Q9Y2X3 529 aaKnown RBP6.1□□□□□ -1.43
CD44-213ENST00000525209 NBPF26B4DH59 902 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 ATP9BO43861 1147 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 LZTS3O60299 673 aaPredicted RBP6.09□□□□□ -1.43
CD44-213ENST00000525209 LILRB3O75022 631 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 RNF40O75150 1001 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 EIF3JO75822 258 aaKnown RBP6.09□□□□□ -1.43
CD44-213ENST00000525209 ATP2B1P20020 1258 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 HSP90AB2PQ58FF8 381 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 C9orf131Q5VYM1 1079 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 SGSM3Q96HU1 749 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 PIF1Q9H611 641 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 CHPF2Q9P2E5 772 aa6.09□□□□□ -1.43
CD44-213ENST00000525209 TSR3Q9UJK0 312 aaKnown RBP6.09□□□□□ -1.43
CD44-213ENST00000525209 NOVA2Q9UNW9 492 aaKnown RBP6.09□□□□□ -1.43
CD44-213ENST00000525209 LAS1LQ9Y4W2 734 aaKnown RBP6.09□□□□□ -1.43
CD44-213ENST00000525209 ABCC9O60706 1549 aa6.09□□□□□ -1.44
CD44-213ENST00000525209 A0A0G2JS52 829 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 MRPL58Q14197 206 aaKnown RBP6.08□□□□□ -1.44
CD44-213ENST00000525209 COL19A1Q14993 1142 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 TCEAL1Q15170 157 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 SPIRE2Q8WWL2 714 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 PRDM10Q9NQV6 1147 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 NLRP2Q9NX02 1062 aa6.08□□□□□ -1.44
CD44-213ENST00000525209 PTMSP20962 102 aa6.07□□□□□ -1.44
CD44-213ENST00000525209 GTF2F1P35269 517 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-213ENST00000525209 PPP4CP60510 307 aa6.07□□□□□ -1.44
CD44-213ENST00000525209 FAM50AQ14320 339 aaKnown RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 QPCTQ16769 361 aa6.07□□□□□ -1.44
CD44-213ENST00000525209 RTL5Q5HYW3 569 aaPredicted RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 RSBN1LQ6PCB5 846 aaPredicted RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 METTL3Q86U44 580 aaKnown RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 ZCRB1Q8TBF4 217 aaKnown RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 NLRP7Q8WX94 980 aa6.07□□□□□ -1.44
CD44-213ENST00000525209 PMM1Q92871 262 aa6.07□□□□□ -1.44
CD44-213ENST00000525209 CLP1Q92989 425 aaKnown RBP6.07□□□□□ -1.44
CD44-213ENST00000525209 CREB3O43889 395 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 ITGBL1O95965 494 aaPredicted RBP6.06□□□□□ -1.44
CD44-213ENST00000525209 RBL2Q08999 1139 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 CSPP1Q1MSJ5 1256 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 FAM161AQ3B820 660 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 LDLRAD1Q5T700 205 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 IFFO2Q5TF58 517 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 TMTC2Q8N394 836 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 NME8Q8N427 588 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 TTC13Q8NBP0 860 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 PKNOX2Q96KN3 472 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 ASB16Q96NS5 453 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 TRIM34Q9BYJ4 488 aa6.06□□□□□ -1.44
CD44-213ENST00000525209 PPFIA4O75335 1185 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 OATP04181 439 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 GJA5P36382 358 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 FAM69CQ0P6D2 419 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 SEMA3FQ13275 785 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 SWT1Q5T5J6 900 aaKnown RBP6.05□□□□□ -1.44
CD44-213ENST00000525209 METTL16Q86W50 562 aaKnown RBP6.05□□□□□ -1.44
CD44-213ENST00000525209 NT5DC4Q86YG4 428 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 GPATCH11Q8N954 259 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 EVI5LQ96CN4 794 aa6.05□□□□□ -1.44
CD44-213ENST00000525209 NAP1L5Q96NT1 182 aaPredicted RBP6.05□□□□□ -1.44
CD44-213ENST00000525209 IQSEC3Q9UPP2 1182 aaPredicted RBP6.05□□□□□ -1.44
CD44-213ENST00000525209 U2SURPO15042 1029 aaKnown RBP6.04□□□□□ -1.44
CD44-213ENST00000525209 HSD3B2P26439 372 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 KCNC4Q03721 635 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 RNF187Q5TA31 235 aaPredicted RBP6.04□□□□□ -1.44
CD44-213ENST00000525209 ZNF746Q6NUN9 644 aaPredicted RBP6.04□□□□□ -1.44
CD44-213ENST00000525209 NYAP1Q6ZVC0 841 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 GMLQ99445 158 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 SPOCK3Q9BQ16 436 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 ZSWIM4Q9H7M6 989 aa6.04□□□□□ -1.44
CD44-213ENST00000525209 ATP2B4P23634 1241 aa6.03□□□□□ -1.44
CD44-213ENST00000525209 APLP1P51693 650 aa6.03□□□□□ -1.44
CD44-213ENST00000525209 FOXD4L6Q3SYB3 417 aaPredicted RBP6.03□□□□□ -1.44
CD44-213ENST00000525209 EAPPQ56P03 285 aaPredicted RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms