RNA–Protein interactions for RNA: ENST00000512526.1

SGCA-208, Transcript of sarcoglycan alpha, humanhuman

TSL 3

Gene SGCA, Length 577 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-208ENST00000512526 ZNF316A6NFI3 1004 aaPredicted RBP21.55■■□□□ 1.04
SGCA-208ENST00000512526 LARP1Q6PKG0 1096 aaKnown RBP21.55■■□□□ 1.04
SGCA-208ENST00000512526 MORC1Q86VD1 984 aa21.55■■□□□ 1.04
SGCA-208ENST00000512526 LMO7Q8WWI1 1683 aa21.54■■□□□ 1.04
SGCA-208ENST00000512526 DDX10Q13206 875 aaKnown RBP21.54■■□□□ 1.04
SGCA-208ENST00000512526 POLKQ9UBT6 870 aa21.54■■□□□ 1.04
SGCA-208ENST00000512526 SPATA31A5Q5VU36 1347 aa21.54■■□□□ 1.04
SGCA-208ENST00000512526 SPATA31A7Q8IWB4 1347 aa21.54■■□□□ 1.04
SGCA-208ENST00000512526 COL5A2P05997 1499 aaPredicted RBP21.53■■□□□ 1.04
SGCA-208ENST00000512526 HOXC9P31274 260 aa21.53■■□□□ 1.04
SGCA-208ENST00000512526 TNNT2P45379 298 aaPredicted RBP21.53■■□□□ 1.04
SGCA-208ENST00000512526 AMPHP49418 695 aa21.53■■□□□ 1.04
SGCA-208ENST00000512526 CC2D1BQ5T0F9 858 aaKnown RBP21.53■■□□□ 1.04
SGCA-208ENST00000512526 COL18A1P39060 1754 aa21.52■■□□□ 1.04
SGCA-208ENST00000512526 ONECUT3O60422 494 aaPredicted RBP21.52■■□□□ 1.04
SGCA-208ENST00000512526 EMILIN1Q9Y6C2 1016 aa21.52■■□□□ 1.04
SGCA-208ENST00000512526 NWD2Q9ULI1 1742 aa21.52■■□□□ 1.03
SGCA-208ENST00000512526 CCDC9Q9Y3X0 531 aaKnown RBP21.51■■□□□ 1.03
SGCA-208ENST00000512526 SPATA31A1Q5TZJ5 1347 aa21.51■■□□□ 1.03
SGCA-208ENST00000512526 PLCH1Q4KWH8 1693 aa21.5■■□□□ 1.03
SGCA-208ENST00000512526 ABCC6O95255 1503 aa21.5■■□□□ 1.03
SGCA-208ENST00000512526 KIF24Q5T7B8 1368 aa21.5■■□□□ 1.03
SGCA-208ENST00000512526 WDR17Q8IZU2 1322 aa21.5■■□□□ 1.03
SGCA-208ENST00000512526 ANKRD24Q8TF21 1146 aa21.49■■□□□ 1.03
SGCA-208ENST00000512526 KIF20BQ96Q89 1820 aa21.49■■□□□ 1.03
SGCA-208ENST00000512526 ERBB3P21860 1342 aa21.49■■□□□ 1.03
SGCA-208ENST00000512526 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.49■■□□□ 1.03
SGCA-208ENST00000512526 RTL1A6NKG5 1358 aa21.48■■□□□ 1.03
SGCA-208ENST00000512526 BLMP54132 1417 aaPredicted RBP21.48■■□□□ 1.03
SGCA-208ENST00000512526 HSP90AB2PQ58FF8 381 aa21.48■■□□□ 1.03
SGCA-208ENST00000512526 NRAPQ86VF7 1730 aa21.48■■□□□ 1.03
SGCA-208ENST00000512526 TOM1L2Q6ZVM7 507 aa21.47■■□□□ 1.03
SGCA-208ENST00000512526 CARD10Q9BWT7 1032 aa21.47■■□□□ 1.03
SGCA-208ENST00000512526 INSRP06213 1382 aa21.46■■□□□ 1.03
SGCA-208ENST00000512526 FLT4P35916 1363 aa21.46■■□□□ 1.03
SGCA-208ENST00000512526 CRB1P82279 1406 aa21.46■■□□□ 1.03
SGCA-208ENST00000512526 CDK12Q9NYV4 1490 aaPredicted RBP21.45■■□□□ 1.03
SGCA-208ENST00000512526 PPM1GO15355 546 aaPredicted RBP21.45■■□□□ 1.02
SGCA-208ENST00000512526 CSB-PGBD3P0DP91 1061 aa21.45■■□□□ 1.02
SGCA-208ENST00000512526 CNGB1Q14028 1251 aaPredicted RBP21.45■■□□□ 1.02
SGCA-208ENST00000512526 FAM98CQ17RN3 349 aaKnown RBP21.45■■□□□ 1.02
SGCA-208ENST00000512526 BARGINQ6ZT62 677 aa21.45■■□□□ 1.02
SGCA-208ENST00000512526 TCP11L2Q8N4U5 519 aa21.45■■□□□ 1.02
SGCA-208ENST00000512526 USP35Q9P2H5 1018 aa21.45■■□□□ 1.02
SGCA-208ENST00000512526 THRAP3Q9Y2W1 955 aaKnown RBP21.45■■□□□ 1.02
SGCA-208ENST00000512526 GLI3P10071 1580 aa21.44■■□□□ 1.02
SGCA-208ENST00000512526 LTV1Q96GA3 475 aaPredicted RBP21.44■■□□□ 1.02
SGCA-208ENST00000512526 SEPT12Q8IYM1 358 aa21.43■■□□□ 1.02
SGCA-208ENST00000512526 NLRP2Q9NX02 1062 aa21.42■■□□□ 1.02
SGCA-208ENST00000512526 RGS12O14924 1447 aa21.41■■□□□ 1.02
SGCA-208ENST00000512526 SMG6Q86US8 1419 aaKnown RBP21.41■■□□□ 1.02
SGCA-208ENST00000512526 MTHFSP49914 203 aa21.41■■□□□ 1.02
SGCA-208ENST00000512526 ANKRD26Q9UPS8 1709 aa21.39■■□□□ 1.01
SGCA-208ENST00000512526 NBPF6Q5VWK0 638 aa21.39■■□□□ 1.01
SGCA-208ENST00000512526 NBPF4Q96M43 638 aa21.39■■□□□ 1.01
SGCA-208ENST00000512526 LTN1O94822 1766 aa21.38■■□□□ 1.01
SGCA-208ENST00000512526 PEAK1Q9H792 1746 aa21.38■■□□□ 1.01
SGCA-208ENST00000512526 EIF4A2Q14240 407 aaKnown RBP21.37■■□□□ 1.01
SGCA-208ENST00000512526 PPP2R1AP30153 589 aa21.36■■□□□ 1.01
SGCA-208ENST00000512526 CDCA7Q9BWT1 371 aaPredicted RBP21.35■■□□□ 1.01
SGCA-208ENST00000512526 PARD3Q8TEW0 1356 aa21.35■■□□□ 1.01
SGCA-208ENST00000512526 RGPD5Q99666 1765 aa21.34■■□□□ 1.01
SGCA-208ENST00000512526 EYA1Q99502 592 aa21.34■■□□□ 1.01
SGCA-208ENST00000512526 DISP2A7MBM2 1401 aa21.33■■□□□ 1.01
SGCA-208ENST00000512526 IL13P35225 146 aa21.33■■□□□ 1.01
SGCA-208ENST00000512526 RALBP1Q15311 655 aa21.33■■□□□ 1.01
SGCA-208ENST00000512526 A0A0G2JS52 829 aa21.32■■□□□ 1
SGCA-208ENST00000512526 MYT1Q01538 1121 aa21.32■■□□□ 1
SGCA-208ENST00000512526 KRT27Q7Z3Y8 459 aa21.32■■□□□ 1
SGCA-208ENST00000512526 IL2RBP14784 551 aa21.31■■□□□ 1
SGCA-208ENST00000512526 USHBP1Q8N6Y0 703 aa21.31■■□□□ 1
SGCA-208ENST00000512526 MAP2P11137 1827 aaKnown RBP21.3■■□□□ 1
SGCA-208ENST00000512526 THSD7AQ9UPZ6 1657 aa21.28■■□□□ 1
SGCA-208ENST00000512526 DDB1Q16531 1140 aa21.28■■□□□ 1
SGCA-208ENST00000512526 NCAPD2Q15021 1401 aa21.28■■□□□ 1
SGCA-208ENST00000512526 IGSF1Q8N6C5 1336 aa21.28■■□□□ 1
SGCA-208ENST00000512526 EXOC5O00471 708 aa21.27■■□□□ 1
SGCA-208ENST00000512526 DIAPH1O60610 1272 aaKnown RBP21.27■■□□□ 1
SGCA-208ENST00000512526 PDE3BQ13370 1112 aa21.27■■□□□ 1
SGCA-208ENST00000512526 PRKRIP1Q9H875 184 aaPredicted RBP21.27■■□□□ 1
SGCA-208ENST00000512526 FAM182BQ5T319 152 aa21.24■□□□□ 0.99
SGCA-208ENST00000512526 RAPGEF4Q8WZA2 1011 aa21.24■□□□□ 0.99
SGCA-208ENST00000512526 CFAP53Q96M91 514 aa21.24■□□□□ 0.99
SGCA-208ENST00000512526 MARCH10Q8NA82 808 aaPredicted RBP21.23■□□□□ 0.99
SGCA-208ENST00000512526 COL3A1P02461 1466 aaPredicted RBP21.22■□□□□ 0.99
SGCA-208ENST00000512526 TATP17735 454 aaPredicted RBP21.22■□□□□ 0.99
SGCA-208ENST00000512526 FAM208AQ9UK61 1670 aaKnown RBP21.21■□□□□ 0.99
SGCA-208ENST00000512526 MEGF6O75095 1541 aa21.21■□□□□ 0.99
SGCA-208ENST00000512526 SULT6B1Q6IMI4 303 aa21.21■□□□□ 0.99
SGCA-208ENST00000512526 AEBP1Q8IUX7 1158 aa21.21■□□□□ 0.99
SGCA-208ENST00000512526 ZCRB1Q8TBF4 217 aaKnown RBP21.21■□□□□ 0.99
SGCA-208ENST00000512526 MYBBP1AQ9BQG0 1328 aaKnown RBP21.21■□□□□ 0.99
SGCA-208ENST00000512526 FAM196AQ6ZSG2 479 aa21.2■□□□□ 0.98
SGCA-208ENST00000512526 UPF1Q92900 1129 aaKnown RBP eCLIP21.2■□□□□ 0.98
SGCA-208ENST00000512526 OVOS2A0A0G2JMS6 1433 aa21.2■□□□□ 0.98
SGCA-208ENST00000512526 KDRP35968 1356 aa21.19■□□□□ 0.98
SGCA-208ENST00000512526 TNS2Q63HR2 1409 aa21.19■□□□□ 0.98
SGCA-208ENST00000512526 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.18■□□□□ 0.98
SGCA-208ENST00000512526 PARP4Q9UKK3 1724 aaKnown RBP21.18■□□□□ 0.98
SGCA-208ENST00000512526 DDX54Q8TDD1 881 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms