RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 KIF20BQ96Q89 1820 aa21.45■■□□□ 1.02
C9orf3-219ENST00000488186 NSD2O96028 1365 aa21.45■■□□□ 1.02
C9orf3-219ENST00000488186 NFAT5O94916 1531 aa21.45■■□□□ 1.02
C9orf3-219ENST00000488186 TNNT2P45379 298 aaPredicted RBP21.44■■□□□ 1.02
C9orf3-219ENST00000488186 CC2D1BQ5T0F9 858 aaKnown RBP21.44■■□□□ 1.02
C9orf3-219ENST00000488186 COL18A1P39060 1754 aa21.43■■□□□ 1.02
C9orf3-219ENST00000488186 ONECUT3O60422 494 aaPredicted RBP21.43■■□□□ 1.02
C9orf3-219ENST00000488186 AMPHP49418 695 aa21.43■■□□□ 1.02
C9orf3-219ENST00000488186 STRN4Q9NRL3 753 aa21.43■■□□□ 1.02
C9orf3-219ENST00000488186 CCDC9Q9Y3X0 531 aaKnown RBP21.43■■□□□ 1.02
C9orf3-219ENST00000488186 AMER1Q5JTC6 1135 aaPredicted RBP21.42■■□□□ 1.02
C9orf3-219ENST00000488186 CAMTA1Q9Y6Y1 1673 aa21.42■■□□□ 1.02
C9orf3-219ENST00000488186 FBLN1P23142 703 aa21.41■■□□□ 1.02
C9orf3-219ENST00000488186 GLI3P10071 1580 aa21.4■■□□□ 1.02
C9orf3-219ENST00000488186 RRS1Q15050 365 aaKnown RBP21.4■■□□□ 1.02
C9orf3-219ENST00000488186 PPM1GO15355 546 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-219ENST00000488186 SPATA31A5Q5VU36 1347 aa21.38■■□□□ 1.01
C9orf3-219ENST00000488186 SPATA31A7Q8IWB4 1347 aa21.38■■□□□ 1.01
C9orf3-219ENST00000488186 CSB-PGBD3P0DP91 1061 aa21.38■■□□□ 1.01
C9orf3-219ENST00000488186 RGS12O14924 1447 aa21.38■■□□□ 1.01
C9orf3-219ENST00000488186 MAP3K19Q56UN5 1328 aa21.37■■□□□ 1.01
C9orf3-219ENST00000488186 IP6K1Q92551 441 aa21.37■■□□□ 1.01
C9orf3-219ENST00000488186 COL5A2P05997 1499 aaPredicted RBP21.37■■□□□ 1.01
C9orf3-219ENST00000488186 AXIN2Q9Y2T1 843 aa21.36■■□□□ 1.01
C9orf3-219ENST00000488186 LTN1O94822 1766 aa21.35■■□□□ 1.01
C9orf3-219ENST00000488186 NPC1L1Q9UHC9 1359 aa21.35■■□□□ 1.01
C9orf3-219ENST00000488186 SPATA31A1Q5TZJ5 1347 aa21.34■■□□□ 1.01
C9orf3-219ENST00000488186 LTV1Q96GA3 475 aaPredicted RBP21.34■■□□□ 1.01
C9orf3-219ENST00000488186 THRAP3Q9Y2W1 955 aaKnown RBP21.34■■□□□ 1.01
C9orf3-219ENST00000488186 HOXC9P31274 260 aa21.33■■□□□ 1.01
C9orf3-219ENST00000488186 TOM1L2Q6ZVM7 507 aa21.33■■□□□ 1.01
C9orf3-219ENST00000488186 EMILIN1Q9Y6C2 1016 aa21.33■■□□□ 1.01
C9orf3-219ENST00000488186 LARP1Q6PKG0 1096 aaKnown RBP21.32■■□□□ 1
C9orf3-219ENST00000488186 BARGINQ6ZT62 677 aa21.32■■□□□ 1
C9orf3-219ENST00000488186 USP35Q9P2H5 1018 aa21.32■■□□□ 1
C9orf3-219ENST00000488186 RGPD5Q99666 1765 aa21.32■■□□□ 1
C9orf3-219ENST00000488186 KIF24Q5T7B8 1368 aa21.32■■□□□ 1
C9orf3-219ENST00000488186 ANKRD26Q9UPS8 1709 aa21.32■■□□□ 1
C9orf3-219ENST00000488186 BLMP54132 1417 aaPredicted RBP21.31■■□□□ 1
C9orf3-219ENST00000488186 ANKRD24Q8TF21 1146 aa21.31■■□□□ 1
C9orf3-219ENST00000488186 POLKQ9UBT6 870 aa21.31■■□□□ 1
C9orf3-219ENST00000488186 WDR17Q8IZU2 1322 aa21.3■■□□□ 1
C9orf3-219ENST00000488186 CRB1P82279 1406 aa21.3■■□□□ 1
C9orf3-219ENST00000488186 RTL1A6NKG5 1358 aa21.3■■□□□ 1
C9orf3-219ENST00000488186 FLT4P35916 1363 aa21.29■■□□□ 1
C9orf3-219ENST00000488186 A0A0G2JS52 829 aa21.29■■□□□ 1
C9orf3-219ENST00000488186 MYT1Q01538 1121 aa21.29■■□□□ 1
C9orf3-219ENST00000488186 NLRP2Q9NX02 1062 aa21.29■■□□□ 1
C9orf3-219ENST00000488186 THSD7AQ9UPZ6 1657 aa21.28■■□□□ 1
C9orf3-219ENST00000488186 HSP90AB2PQ58FF8 381 aa21.28■■□□□ 1
C9orf3-219ENST00000488186 SEPT12Q8IYM1 358 aa21.27■■□□□ 1
C9orf3-219ENST00000488186 TCP11L2Q8N4U5 519 aa21.27■■□□□ 1
C9orf3-219ENST00000488186 SMG6Q86US8 1419 aaKnown RBP21.27■■□□□ 1
C9orf3-219ENST00000488186 BRWD3Q6RI45 1802 aa21.27■□□□□ 0.99
C9orf3-219ENST00000488186 CARD10Q9BWT7 1032 aa21.26■□□□□ 0.99
C9orf3-219ENST00000488186 MAP2P11137 1827 aaKnown RBP21.26■□□□□ 0.99
C9orf3-219ENST00000488186 ERBB3P21860 1342 aa21.26■□□□□ 0.99
C9orf3-219ENST00000488186 MTHFSP49914 203 aa21.25■□□□□ 0.99
C9orf3-219ENST00000488186 FAM208AQ9UK61 1670 aaKnown RBP21.24■□□□□ 0.99
C9orf3-219ENST00000488186 INSRP06213 1382 aa21.24■□□□□ 0.99
C9orf3-219ENST00000488186 FAM98CQ17RN3 349 aaKnown RBP21.24■□□□□ 0.99
C9orf3-219ENST00000488186 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
C9orf3-219ENST00000488186 RALBP1Q15311 655 aa21.23■□□□□ 0.99
C9orf3-219ENST00000488186 PARP4Q9UKK3 1724 aaKnown RBP21.21■□□□□ 0.99
C9orf3-219ENST00000488186 EP400Q96L91 3159 aa21.21■□□□□ 0.99
C9orf3-219ENST00000488186 CFAP53Q96M91 514 aa21.21■□□□□ 0.99
C9orf3-219ENST00000488186 PPP2R1AP30153 589 aa21.2■□□□□ 0.98
C9orf3-219ENST00000488186 KRT27Q7Z3Y8 459 aa21.2■□□□□ 0.98
C9orf3-219ENST00000488186 CCDC125Q86Z20 511 aa21.19■□□□□ 0.98
C9orf3-219ENST00000488186 UPF1Q92900 1129 aaKnown RBP eCLIP21.19■□□□□ 0.98
C9orf3-219ENST00000488186 WNK3Q9BYP7 1800 aa21.18■□□□□ 0.98
C9orf3-219ENST00000488186 PEAK1Q9H792 1746 aa21.18■□□□□ 0.98
C9orf3-219ENST00000488186 EIF4A2Q14240 407 aaKnown RBP21.17■□□□□ 0.98
C9orf3-219ENST00000488186 NBPF6Q5VWK0 638 aa21.17■□□□□ 0.98
C9orf3-219ENST00000488186 NBPF4Q96M43 638 aa21.17■□□□□ 0.98
C9orf3-219ENST00000488186 DISP2A7MBM2 1401 aa21.16■□□□□ 0.98
C9orf3-219ENST00000488186 PARD3Q8TEW0 1356 aa21.16■□□□□ 0.98
C9orf3-219ENST00000488186 ANP32CO43423 234 aa21.15■□□□□ 0.98
C9orf3-219ENST00000488186 DIAPH1O60610 1272 aaKnown RBP21.15■□□□□ 0.98
C9orf3-219ENST00000488186 USHBP1Q8N6Y0 703 aa21.15■□□□□ 0.98
C9orf3-219ENST00000488186 IL2RBP14784 551 aa21.14■□□□□ 0.97
C9orf3-219ENST00000488186 PDE3BQ13370 1112 aa21.13■□□□□ 0.97
C9orf3-219ENST00000488186 RAPGEF4Q8WZA2 1011 aa21.13■□□□□ 0.97
C9orf3-219ENST00000488186 EYA1Q99502 592 aa21.13■□□□□ 0.97
C9orf3-219ENST00000488186 PRKRIP1Q9H875 184 aaPredicted RBP21.13■□□□□ 0.97
C9orf3-219ENST00000488186 EXOC5O00471 708 aa21.12■□□□□ 0.97
C9orf3-219ENST00000488186 DDB1Q16531 1140 aa21.12■□□□□ 0.97
C9orf3-219ENST00000488186 NUDCQ9Y266 331 aa21.12■□□□□ 0.97
C9orf3-219ENST00000488186 MYBBP1AQ9BQG0 1328 aaKnown RBP21.11■□□□□ 0.97
C9orf3-219ENST00000488186 BCL9O00512 1426 aa21.11■□□□□ 0.97
C9orf3-219ENST00000488186 U2SURPO15042 1029 aaKnown RBP21.1■□□□□ 0.97
C9orf3-219ENST00000488186 TATP17735 454 aaPredicted RBP21.1■□□□□ 0.97
C9orf3-219ENST00000488186 IL13P35225 146 aa21.1■□□□□ 0.97
C9orf3-219ENST00000488186 FAM196AQ6ZSG2 479 aa21.1■□□□□ 0.97
C9orf3-219ENST00000488186 LRRC37A3O60309 1634 aa21.1■□□□□ 0.97
C9orf3-219ENST00000488186 NCAPD2Q15021 1401 aa21.08■□□□□ 0.97
C9orf3-219ENST00000488186 RGPD2P0DJD1 1756 aa21.08■□□□□ 0.96
C9orf3-219ENST00000488186 TNS2Q63HR2 1409 aa21.06■□□□□ 0.96
C9orf3-219ENST00000488186 SULT6B1Q6IMI4 303 aa21.06■□□□□ 0.96
C9orf3-219ENST00000488186 PLEKHG2Q9H7P9 1386 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms