RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 COL5A2P05997 1499 aaPredicted RBP22.8■■□□□ 1.24
HMGN1-214ENST00000482733 ONECUT3O60422 494 aaPredicted RBP22.8■■□□□ 1.24
HMGN1-214ENST00000482733 GLI3P10071 1580 aa22.8■■□□□ 1.24
HMGN1-214ENST00000482733 WASHC2AQ641Q2 1341 aa22.8■■□□□ 1.24
HMGN1-214ENST00000482733 AXIN2Q9Y2T1 843 aa22.79■■□□□ 1.24
HMGN1-214ENST00000482733 SPATA31A1Q5TZJ5 1347 aa22.79■■□□□ 1.24
HMGN1-214ENST00000482733 LARP1Q6PKG0 1096 aaKnown RBP22.78■■□□□ 1.24
HMGN1-214ENST00000482733 KNSTRNQ9Y448 316 aa22.78■■□□□ 1.24
HMGN1-214ENST00000482733 NSD2O96028 1365 aa22.76■■□□□ 1.23
HMGN1-214ENST00000482733 WDR17Q8IZU2 1322 aa22.76■■□□□ 1.23
HMGN1-214ENST00000482733 COL18A1P39060 1754 aa22.76■■□□□ 1.23
HMGN1-214ENST00000482733 CRB1P82279 1406 aa22.75■■□□□ 1.23
HMGN1-214ENST00000482733 FAM98CQ17RN3 349 aaKnown RBP22.75■■□□□ 1.23
HMGN1-214ENST00000482733 SEPT12Q8IYM1 358 aa22.75■■□□□ 1.23
HMGN1-214ENST00000482733 IP6K1Q92551 441 aa22.75■■□□□ 1.23
HMGN1-214ENST00000482733 THRAP3Q9Y2W1 955 aaKnown RBP22.75■■□□□ 1.23
HMGN1-214ENST00000482733 MAP3K19Q56UN5 1328 aa22.75■■□□□ 1.23
HMGN1-214ENST00000482733 KIF20BQ96Q89 1820 aa22.75■■□□□ 1.23
HMGN1-214ENST00000482733 CSB-PGBD3P0DP91 1061 aa22.74■■□□□ 1.23
HMGN1-214ENST00000482733 AMPHP49418 695 aa22.74■■□□□ 1.23
HMGN1-214ENST00000482733 TOM1L2Q6ZVM7 507 aa22.74■■□□□ 1.23
HMGN1-214ENST00000482733 TCP11L2Q8N4U5 519 aa22.74■■□□□ 1.23
HMGN1-214ENST00000482733 BLMP54132 1417 aaPredicted RBP22.74■■□□□ 1.23
HMGN1-214ENST00000482733 BARGINQ6ZT62 677 aa22.73■■□□□ 1.23
HMGN1-214ENST00000482733 USP35Q9P2H5 1018 aa22.73■■□□□ 1.23
HMGN1-214ENST00000482733 RTL1A6NKG5 1358 aa22.73■■□□□ 1.23
HMGN1-214ENST00000482733 A0A0G2JS52 829 aa22.72■■□□□ 1.23
HMGN1-214ENST00000482733 MYT1Q01538 1121 aa22.72■■□□□ 1.23
HMGN1-214ENST00000482733 FBLN1P23142 703 aa22.71■■□□□ 1.23
HMGN1-214ENST00000482733 RRS1Q15050 365 aaKnown RBP22.71■■□□□ 1.23
HMGN1-214ENST00000482733 ERBB3P21860 1342 aa22.71■■□□□ 1.23
HMGN1-214ENST00000482733 KIF24Q5T7B8 1368 aa22.71■■□□□ 1.23
HMGN1-214ENST00000482733 HOXC9P31274 260 aa22.7■■□□□ 1.22
HMGN1-214ENST00000482733 CARD10Q9BWT7 1032 aa22.7■■□□□ 1.22
HMGN1-214ENST00000482733 ANKRD24Q8TF21 1146 aa22.69■■□□□ 1.22
HMGN1-214ENST00000482733 LTN1O94822 1766 aa22.68■■□□□ 1.22
HMGN1-214ENST00000482733 PER1O15534 1290 aaPredicted RBP22.68■■□□□ 1.22
HMGN1-214ENST00000482733 AMER1Q5JTC6 1135 aaPredicted RBP22.68■■□□□ 1.22
HMGN1-214ENST00000482733 MORC1Q86VD1 984 aa22.67■■□□□ 1.22
HMGN1-214ENST00000482733 KRT27Q7Z3Y8 459 aa22.66■■□□□ 1.22
HMGN1-214ENST00000482733 CDCA7Q9BWT1 371 aaPredicted RBP22.66■■□□□ 1.22
HMGN1-214ENST00000482733 FLT4P35916 1363 aa22.65■■□□□ 1.22
HMGN1-214ENST00000482733 NLRP2Q9NX02 1062 aa22.65■■□□□ 1.22
HMGN1-214ENST00000482733 THSD7AQ9UPZ6 1657 aa22.63■■□□□ 1.21
HMGN1-214ENST00000482733 LTV1Q96GA3 475 aaPredicted RBP22.63■■□□□ 1.21
HMGN1-214ENST00000482733 EMILIN1Q9Y6C2 1016 aa22.63■■□□□ 1.21
HMGN1-214ENST00000482733 INSRP06213 1382 aa22.63■■□□□ 1.21
HMGN1-214ENST00000482733 NPC1L1Q9UHC9 1359 aa22.63■■□□□ 1.21
HMGN1-214ENST00000482733 TNNT2P45379 298 aaPredicted RBP22.62■■□□□ 1.21
HMGN1-214ENST00000482733 POLKQ9UBT6 870 aa22.62■■□□□ 1.21
HMGN1-214ENST00000482733 SMG6Q86US8 1419 aaKnown RBP22.62■■□□□ 1.21
HMGN1-214ENST00000482733 ANKRD26Q9UPS8 1709 aa22.62■■□□□ 1.21
HMGN1-214ENST00000482733 PPM1GO15355 546 aaPredicted RBP22.61■■□□□ 1.21
HMGN1-214ENST00000482733 HSP90AB2PQ58FF8 381 aa22.61■■□□□ 1.21
HMGN1-214ENST00000482733 RGPD5Q99666 1765 aa22.61■■□□□ 1.21
HMGN1-214ENST00000482733 PDE3BQ13370 1112 aa22.6■■□□□ 1.21
HMGN1-214ENST00000482733 UPF1Q92900 1129 aaKnown RBP eCLIP22.6■■□□□ 1.21
HMGN1-214ENST00000482733 DDB1Q16531 1140 aa22.57■■□□□ 1.2
HMGN1-214ENST00000482733 CC2D1BQ5T0F9 858 aaKnown RBP22.57■■□□□ 1.2
HMGN1-214ENST00000482733 DISP2A7MBM2 1401 aa22.57■■□□□ 1.2
HMGN1-214ENST00000482733 IL2RBP14784 551 aa22.56■■□□□ 1.2
HMGN1-214ENST00000482733 CCDC125Q86Z20 511 aa22.56■■□□□ 1.2
HMGN1-214ENST00000482733 FAM208AQ9UK61 1670 aaKnown RBP22.55■■□□□ 1.2
HMGN1-214ENST00000482733 PEAK1Q9H792 1746 aa22.55■■□□□ 1.2
HMGN1-214ENST00000482733 BRWD3Q6RI45 1802 aa22.54■■□□□ 1.2
HMGN1-214ENST00000482733 EXOC5O00471 708 aa22.53■■□□□ 1.2
HMGN1-214ENST00000482733 NBPF6Q5VWK0 638 aa22.53■■□□□ 1.2
HMGN1-214ENST00000482733 FAM196AQ6ZSG2 479 aa22.53■■□□□ 1.2
HMGN1-214ENST00000482733 NBPF4Q96M43 638 aa22.53■■□□□ 1.2
HMGN1-214ENST00000482733 PARP4Q9UKK3 1724 aaKnown RBP22.53■■□□□ 1.2
HMGN1-214ENST00000482733 MAP2P11137 1827 aaKnown RBP22.5■■□□□ 1.19
HMGN1-214ENST00000482733 EP400Q96L91 3159 aa22.49■■□□□ 1.19
HMGN1-214ENST00000482733 EIF4A2Q14240 407 aaKnown RBP22.48■■□□□ 1.19
HMGN1-214ENST00000482733 FAM182BQ5T319 152 aa22.48■■□□□ 1.19
HMGN1-214ENST00000482733 LRRC37A3O60309 1634 aa22.48■■□□□ 1.19
HMGN1-214ENST00000482733 TNS2Q63HR2 1409 aa22.48■■□□□ 1.19
HMGN1-214ENST00000482733 WNK3Q9BYP7 1800 aa22.47■■□□□ 1.19
HMGN1-214ENST00000482733 SF3B2Q13435 895 aaKnown RBP22.47■■□□□ 1.19
HMGN1-214ENST00000482733 CNGB1Q14028 1251 aaPredicted RBP22.47■■□□□ 1.19
HMGN1-214ENST00000482733 RAPGEF4Q8WZA2 1011 aa22.47■■□□□ 1.19
HMGN1-214ENST00000482733 MTHFSP49914 203 aa22.46■■□□□ 1.19
HMGN1-214ENST00000482733 OVOS2A0A0G2JMS6 1433 aa22.46■■□□□ 1.19
HMGN1-214ENST00000482733 DDX10Q13206 875 aaKnown RBP22.45■■□□□ 1.18
HMGN1-214ENST00000482733 USHBP1Q8N6Y0 703 aa22.45■■□□□ 1.18
HMGN1-214ENST00000482733 EYA1Q99502 592 aa22.45■■□□□ 1.18
HMGN1-214ENST00000482733 TATP17735 454 aaPredicted RBP22.44■■□□□ 1.18
HMGN1-214ENST00000482733 MARCH10Q8NA82 808 aaPredicted RBP22.44■■□□□ 1.18
HMGN1-214ENST00000482733 BCL9O00512 1426 aa22.43■■□□□ 1.18
HMGN1-214ENST00000482733 NCAPD2Q15021 1401 aa22.43■■□□□ 1.18
HMGN1-214ENST00000482733 ZCRB1Q8TBF4 217 aaKnown RBP22.42■■□□□ 1.18
HMGN1-214ENST00000482733 MEGF6O75095 1541 aa22.41■■□□□ 1.18
HMGN1-214ENST00000482733 IGSF1Q8N6C5 1336 aa22.4■■□□□ 1.18
HMGN1-214ENST00000482733 TRIM37O94972 964 aa22.39■■□□□ 1.17
HMGN1-214ENST00000482733 IL13P35225 146 aa22.39■■□□□ 1.17
HMGN1-214ENST00000482733 PLEKHG2Q9H7P9 1386 aa22.38■■□□□ 1.17
HMGN1-214ENST00000482733 RGPD2P0DJD1 1756 aa22.38■■□□□ 1.17
HMGN1-214ENST00000482733 ZNF316A6NFI3 1004 aaPredicted RBP22.38■■□□□ 1.17
HMGN1-214ENST00000482733 BAG6P46379 1132 aa22.38■■□□□ 1.17
HMGN1-214ENST00000482733 DIAPH1O60610 1272 aaKnown RBP22.37■■□□□ 1.17
HMGN1-214ENST00000482733 PPP2R1AP30153 589 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms