RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 ILDR2Q71H61 639 aa20.04■□□□□ 0.8
LIMS3-202ENST00000479168 STRN4Q9NRL3 753 aa20.04■□□□□ 0.8
LIMS3-202ENST00000479168 KIF20BQ96Q89 1820 aa20.04■□□□□ 0.8
LIMS3-202ENST00000479168 CAMTA1Q9Y6Y1 1673 aa20.03■□□□□ 0.8
LIMS3-202ENST00000479168 SPATA31A5Q5VU36 1347 aa20.03■□□□□ 0.8
LIMS3-202ENST00000479168 SPATA31A7Q8IWB4 1347 aa20.03■□□□□ 0.8
LIMS3-202ENST00000479168 THRAP3Q9Y2W1 955 aaKnown RBP20.02■□□□□ 0.8
LIMS3-202ENST00000479168 RGS12O14924 1447 aa20.02■□□□□ 0.79
LIMS3-202ENST00000479168 CRB1P82279 1406 aa20.02■□□□□ 0.79
LIMS3-202ENST00000479168 AMPHP49418 695 aa20.01■□□□□ 0.79
LIMS3-202ENST00000479168 SPATA31A1Q5TZJ5 1347 aa20.01■□□□□ 0.79
LIMS3-202ENST00000479168 WDR17Q8IZU2 1322 aa20.01■□□□□ 0.79
LIMS3-202ENST00000479168 CSB-PGBD3P0DP91 1061 aa20■□□□□ 0.79
LIMS3-202ENST00000479168 MAP3K19Q56UN5 1328 aa20■□□□□ 0.79
LIMS3-202ENST00000479168 NPC1L1Q9UHC9 1359 aa19.99■□□□□ 0.79
LIMS3-202ENST00000479168 IP6K1Q92551 441 aa19.99■□□□□ 0.79
LIMS3-202ENST00000479168 SMG6Q86US8 1419 aaKnown RBP19.99■□□□□ 0.79
LIMS3-202ENST00000479168 GLI3P10071 1580 aa19.99■□□□□ 0.79
LIMS3-202ENST00000479168 ERBB3P21860 1342 aa19.99■□□□□ 0.79
LIMS3-202ENST00000479168 FLT4P35916 1363 aa19.98■□□□□ 0.79
LIMS3-202ENST00000479168 TOM1L2Q6ZVM7 507 aa19.98■□□□□ 0.79
LIMS3-202ENST00000479168 TCP11L2Q8N4U5 519 aa19.98■□□□□ 0.79
LIMS3-202ENST00000479168 ONECUT3O60422 494 aaPredicted RBP19.97■□□□□ 0.79
LIMS3-202ENST00000479168 LARP1Q6PKG0 1096 aaKnown RBP19.97■□□□□ 0.79
LIMS3-202ENST00000479168 BARGINQ6ZT62 677 aa19.97■□□□□ 0.79
LIMS3-202ENST00000479168 A0A0G2JS52 829 aa19.96■□□□□ 0.79
LIMS3-202ENST00000479168 MYT1Q01538 1121 aa19.96■□□□□ 0.79
LIMS3-202ENST00000479168 AMER1Q5JTC6 1135 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-202ENST00000479168 MORC1Q86VD1 984 aa19.96■□□□□ 0.79
LIMS3-202ENST00000479168 CDCA7Q9BWT1 371 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-202ENST00000479168 AXIN2Q9Y2T1 843 aa19.96■□□□□ 0.79
LIMS3-202ENST00000479168 COL18A1P39060 1754 aa19.95■□□□□ 0.78
LIMS3-202ENST00000479168 HOXC9P31274 260 aa19.95■□□□□ 0.78
LIMS3-202ENST00000479168 CARD10Q9BWT7 1032 aa19.95■□□□□ 0.78
LIMS3-202ENST00000479168 SOCS7O14512 581 aa19.94■□□□□ 0.78
LIMS3-202ENST00000479168 PER1O15534 1290 aaPredicted RBP19.94■□□□□ 0.78
LIMS3-202ENST00000479168 RRS1Q15050 365 aaKnown RBP19.94■□□□□ 0.78
LIMS3-202ENST00000479168 FAM98CQ17RN3 349 aaKnown RBP19.94■□□□□ 0.78
LIMS3-202ENST00000479168 ANKRD24Q8TF21 1146 aa19.94■□□□□ 0.78
LIMS3-202ENST00000479168 ANKRD26Q9UPS8 1709 aa19.93■□□□□ 0.78
LIMS3-202ENST00000479168 SEPT12Q8IYM1 358 aa19.93■□□□□ 0.78
LIMS3-202ENST00000479168 INSRP06213 1382 aa19.93■□□□□ 0.78
LIMS3-202ENST00000479168 LTN1O94822 1766 aa19.93■□□□□ 0.78
LIMS3-202ENST00000479168 USP35Q9P2H5 1018 aa19.92■□□□□ 0.78
LIMS3-202ENST00000479168 NLRP2Q9NX02 1062 aa19.9■□□□□ 0.78
LIMS3-202ENST00000479168 FAM208AQ9UK61 1670 aaKnown RBP19.89■□□□□ 0.77
LIMS3-202ENST00000479168 THSD7AQ9UPZ6 1657 aa19.88■□□□□ 0.77
LIMS3-202ENST00000479168 PPM1GO15355 546 aaPredicted RBP19.88■□□□□ 0.77
LIMS3-202ENST00000479168 TNNT2P45379 298 aaPredicted RBP19.88■□□□□ 0.77
LIMS3-202ENST00000479168 KRT27Q7Z3Y8 459 aa19.88■□□□□ 0.77
LIMS3-202ENST00000479168 POLKQ9UBT6 870 aa19.88■□□□□ 0.77
LIMS3-202ENST00000479168 EMILIN1Q9Y6C2 1016 aa19.88■□□□□ 0.77
LIMS3-202ENST00000479168 CC2D1BQ5T0F9 858 aaKnown RBP19.87■□□□□ 0.77
LIMS3-202ENST00000479168 FBLN1P23142 703 aa19.86■□□□□ 0.77
LIMS3-202ENST00000479168 PDE3BQ13370 1112 aa19.85■□□□□ 0.77
LIMS3-202ENST00000479168 LTV1Q96GA3 475 aaPredicted RBP19.85■□□□□ 0.77
LIMS3-202ENST00000479168 HSP90AB2PQ58FF8 381 aa19.84■□□□□ 0.77
LIMS3-202ENST00000479168 DISP2A7MBM2 1401 aa19.84■□□□□ 0.77
LIMS3-202ENST00000479168 IL2RBP14784 551 aa19.83■□□□□ 0.77
LIMS3-202ENST00000479168 DDB1Q16531 1140 aa19.82■□□□□ 0.76
LIMS3-202ENST00000479168 TNS2Q63HR2 1409 aa19.81■□□□□ 0.76
LIMS3-202ENST00000479168 PEAK1Q9H792 1746 aa19.81■□□□□ 0.76
LIMS3-202ENST00000479168 CCDC125Q86Z20 511 aa19.8■□□□□ 0.76
LIMS3-202ENST00000479168 PLEKHG2Q9H7P9 1386 aa19.8■□□□□ 0.76
LIMS3-202ENST00000479168 PARP4Q9UKK3 1724 aaKnown RBP19.79■□□□□ 0.76
LIMS3-202ENST00000479168 EXOC5O00471 708 aa19.79■□□□□ 0.76
LIMS3-202ENST00000479168 RAPGEF4Q8WZA2 1011 aa19.79■□□□□ 0.76
LIMS3-202ENST00000479168 RGPD5Q99666 1765 aa19.78■□□□□ 0.76
LIMS3-202ENST00000479168 FAM196AQ6ZSG2 479 aa19.78■□□□□ 0.76
LIMS3-202ENST00000479168 OVOS2A0A0G2JMS6 1433 aa19.77■□□□□ 0.76
LIMS3-202ENST00000479168 ZNF316A6NFI3 1004 aaPredicted RBP19.77■□□□□ 0.76
LIMS3-202ENST00000479168 DDX10Q13206 875 aaKnown RBP19.77■□□□□ 0.76
LIMS3-202ENST00000479168 LRRC37A3O60309 1634 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 MTHFSP49914 203 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 EIF4A2Q14240 407 aaKnown RBP19.76■□□□□ 0.75
LIMS3-202ENST00000479168 NBPF6Q5VWK0 638 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 NBPF4Q96M43 638 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 CFAP53Q96M91 514 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 NCAPD2Q15021 1401 aa19.76■□□□□ 0.75
LIMS3-202ENST00000479168 WNK3Q9BYP7 1800 aa19.75■□□□□ 0.75
LIMS3-202ENST00000479168 SF3B2Q13435 895 aaKnown RBP19.75■□□□□ 0.75
LIMS3-202ENST00000479168 UPF1Q92900 1129 aaKnown RBP eCLIP19.75■□□□□ 0.75
LIMS3-202ENST00000479168 TATP17735 454 aaPredicted RBP19.74■□□□□ 0.75
LIMS3-202ENST00000479168 BCL9O00512 1426 aa19.74■□□□□ 0.75
LIMS3-202ENST00000479168 PARD3Q8TEW0 1356 aa19.73■□□□□ 0.75
LIMS3-202ENST00000479168 CNGB1Q14028 1251 aaPredicted RBP19.73■□□□□ 0.75
LIMS3-202ENST00000479168 RALBP1Q15311 655 aa19.73■□□□□ 0.75
LIMS3-202ENST00000479168 IGSF1Q8N6C5 1336 aa19.73■□□□□ 0.75
LIMS3-202ENST00000479168 MAP2P11137 1827 aaKnown RBP19.72■□□□□ 0.75
LIMS3-202ENST00000479168 EYA1Q99502 592 aa19.72■□□□□ 0.75
LIMS3-202ENST00000479168 BRWD3Q6RI45 1802 aa19.7■□□□□ 0.74
LIMS3-202ENST00000479168 DIAPH1O60610 1272 aaKnown RBP19.7■□□□□ 0.74
LIMS3-202ENST00000479168 USHBP1Q8N6Y0 703 aa19.7■□□□□ 0.74
LIMS3-202ENST00000479168 ZCRB1Q8TBF4 217 aaKnown RBP19.7■□□□□ 0.74
LIMS3-202ENST00000479168 MEGF6O75095 1541 aa19.7■□□□□ 0.74
LIMS3-202ENST00000479168 PPP2R1AP30153 589 aa19.69■□□□□ 0.74
LIMS3-202ENST00000479168 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.69■□□□□ 0.74
LIMS3-202ENST00000479168 PCDH11XQ9BZA7 1347 aa19.69■□□□□ 0.74
LIMS3-202ENST00000479168 PCDH11YQ9BZA8 1340 aa19.69■□□□□ 0.74
LIMS3-202ENST00000479168 EP400Q96L91 3159 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms