RNA–Protein interactions for RNA: ENST00000478209.1

PDZRN3-207, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 4

Gene PDZRN3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-207ENST00000478209 ZEB1P37275 1124 aaPredicted RBP22.63■■□□□ 1.21
PDZRN3-207ENST00000478209 CCDC7Q96M83 1385 aa22.63■■□□□ 1.21
PDZRN3-207ENST00000478209 SPATA31A5Q5VU36 1347 aa22.62■■□□□ 1.21
PDZRN3-207ENST00000478209 SPATA31A7Q8IWB4 1347 aa22.62■■□□□ 1.21
PDZRN3-207ENST00000478209 LTN1O94822 1766 aa22.62■■□□□ 1.21
PDZRN3-207ENST00000478209 SPATA31A1Q5TZJ5 1347 aa22.59■■□□□ 1.21
PDZRN3-207ENST00000478209 LARP1Q6PKG0 1096 aaKnown RBP22.59■■□□□ 1.21
PDZRN3-207ENST00000478209 WASHC2AQ641Q2 1341 aa22.58■■□□□ 1.21
PDZRN3-207ENST00000478209 A0A0G2JS52 829 aa22.58■■□□□ 1.21
PDZRN3-207ENST00000478209 MYT1Q01538 1121 aa22.58■■□□□ 1.21
PDZRN3-207ENST00000478209 AXIN2Q9Y2T1 843 aa22.58■■□□□ 1.21
PDZRN3-207ENST00000478209 CSB-PGBD3P0DP91 1061 aa22.57■■□□□ 1.2
PDZRN3-207ENST00000478209 FAM98CQ17RN3 349 aaKnown RBP22.57■■□□□ 1.2
PDZRN3-207ENST00000478209 KNSTRNQ9Y448 316 aa22.57■■□□□ 1.2
PDZRN3-207ENST00000478209 RGPD5Q99666 1765 aa22.57■■□□□ 1.2
PDZRN3-207ENST00000478209 CRB1P82279 1406 aa22.57■■□□□ 1.2
PDZRN3-207ENST00000478209 USP35Q9P2H5 1018 aa22.56■■□□□ 1.2
PDZRN3-207ENST00000478209 MAP3K19Q56UN5 1328 aa22.56■■□□□ 1.2
PDZRN3-207ENST00000478209 WDR17Q8IZU2 1322 aa22.56■■□□□ 1.2
PDZRN3-207ENST00000478209 NSD2O96028 1365 aa22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 ANKRD26Q9UPS8 1709 aa22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 ONECUT3O60422 494 aaPredicted RBP22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 AMPHP49418 695 aa22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 TOM1L2Q6ZVM7 507 aa22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 SEPT12Q8IYM1 358 aa22.55■■□□□ 1.2
PDZRN3-207ENST00000478209 TCP11L2Q8N4U5 519 aa22.54■■□□□ 1.2
PDZRN3-207ENST00000478209 BLMP54132 1417 aaPredicted RBP22.54■■□□□ 1.2
PDZRN3-207ENST00000478209 RTL1A6NKG5 1358 aa22.53■■□□□ 1.2
PDZRN3-207ENST00000478209 FBLN1P23142 703 aa22.53■■□□□ 1.2
PDZRN3-207ENST00000478209 IP6K1Q92551 441 aa22.53■■□□□ 1.2
PDZRN3-207ENST00000478209 THRAP3Q9Y2W1 955 aaKnown RBP22.53■■□□□ 1.2
PDZRN3-207ENST00000478209 RRS1Q15050 365 aaKnown RBP22.52■■□□□ 1.2
PDZRN3-207ENST00000478209 ERBB3P21860 1342 aa22.52■■□□□ 1.2
PDZRN3-207ENST00000478209 BARGINQ6ZT62 677 aa22.51■■□□□ 1.19
PDZRN3-207ENST00000478209 THSD7AQ9UPZ6 1657 aa22.51■■□□□ 1.19
PDZRN3-207ENST00000478209 HOXC9P31274 260 aa22.5■■□□□ 1.19
PDZRN3-207ENST00000478209 ANKRD24Q8TF21 1146 aa22.5■■□□□ 1.19
PDZRN3-207ENST00000478209 BRWD3Q6RI45 1802 aa22.49■■□□□ 1.19
PDZRN3-207ENST00000478209 KIF24Q5T7B8 1368 aa22.49■■□□□ 1.19
PDZRN3-207ENST00000478209 CARD10Q9BWT7 1032 aa22.48■■□□□ 1.19
PDZRN3-207ENST00000478209 KRT27Q7Z3Y8 459 aa22.47■■□□□ 1.19
PDZRN3-207ENST00000478209 NLRP2Q9NX02 1062 aa22.47■■□□□ 1.19
PDZRN3-207ENST00000478209 FLT4P35916 1363 aa22.47■■□□□ 1.19
PDZRN3-207ENST00000478209 MORC1Q86VD1 984 aa22.46■■□□□ 1.19
PDZRN3-207ENST00000478209 LTV1Q96GA3 475 aaPredicted RBP22.46■■□□□ 1.19
PDZRN3-207ENST00000478209 FAM208AQ9UK61 1670 aaKnown RBP22.46■■□□□ 1.19
PDZRN3-207ENST00000478209 TNNT2P45379 298 aaPredicted RBP22.45■■□□□ 1.18
PDZRN3-207ENST00000478209 AMER1Q5JTC6 1135 aaPredicted RBP22.45■■□□□ 1.18
PDZRN3-207ENST00000478209 SMG6Q86US8 1419 aaKnown RBP22.45■■□□□ 1.18
PDZRN3-207ENST00000478209 PER1O15534 1290 aaPredicted RBP22.44■■□□□ 1.18
PDZRN3-207ENST00000478209 EMILIN1Q9Y6C2 1016 aa22.44■■□□□ 1.18
PDZRN3-207ENST00000478209 MAP2P11137 1827 aaKnown RBP22.43■■□□□ 1.18
PDZRN3-207ENST00000478209 WNK3Q9BYP7 1800 aa22.43■■□□□ 1.18
PDZRN3-207ENST00000478209 PEAK1Q9H792 1746 aa22.43■■□□□ 1.18
PDZRN3-207ENST00000478209 PPM1GO15355 546 aaPredicted RBP22.43■■□□□ 1.18
PDZRN3-207ENST00000478209 CDCA7Q9BWT1 371 aaPredicted RBP22.43■■□□□ 1.18
PDZRN3-207ENST00000478209 INSRP06213 1382 aa22.42■■□□□ 1.18
PDZRN3-207ENST00000478209 PARP4Q9UKK3 1724 aaKnown RBP22.42■■□□□ 1.18
PDZRN3-207ENST00000478209 UPF1Q92900 1129 aaKnown RBP eCLIP22.41■■□□□ 1.18
PDZRN3-207ENST00000478209 PDE3BQ13370 1112 aa22.4■■□□□ 1.18
PDZRN3-207ENST00000478209 HSP90AB2PQ58FF8 381 aa22.4■■□□□ 1.18
PDZRN3-207ENST00000478209 POLKQ9UBT6 870 aa22.4■■□□□ 1.18
PDZRN3-207ENST00000478209 NPC1L1Q9UHC9 1359 aa22.39■■□□□ 1.18
PDZRN3-207ENST00000478209 CC2D1BQ5T0F9 858 aaKnown RBP22.39■■□□□ 1.17
PDZRN3-207ENST00000478209 DISP2A7MBM2 1401 aa22.39■■□□□ 1.17
PDZRN3-207ENST00000478209 LRRC37A3O60309 1634 aa22.38■■□□□ 1.17
PDZRN3-207ENST00000478209 DDB1Q16531 1140 aa22.37■■□□□ 1.17
PDZRN3-207ENST00000478209 IL2RBP14784 551 aa22.36■■□□□ 1.17
PDZRN3-207ENST00000478209 RGPD2P0DJD1 1756 aa22.35■■□□□ 1.17
PDZRN3-207ENST00000478209 CNGB1Q14028 1251 aaPredicted RBP22.34■■□□□ 1.17
PDZRN3-207ENST00000478209 FAM182BQ5T319 152 aa22.33■■□□□ 1.17
PDZRN3-207ENST00000478209 EXOC5O00471 708 aa22.32■■□□□ 1.16
PDZRN3-207ENST00000478209 NBPF6Q5VWK0 638 aa22.32■■□□□ 1.16
PDZRN3-207ENST00000478209 FAM196AQ6ZSG2 479 aa22.32■■□□□ 1.16
PDZRN3-207ENST00000478209 CCDC125Q86Z20 511 aa22.32■■□□□ 1.16
PDZRN3-207ENST00000478209 NBPF4Q96M43 638 aa22.32■■□□□ 1.16
PDZRN3-207ENST00000478209 TNS2Q63HR2 1409 aa22.31■■□□□ 1.16
PDZRN3-207ENST00000478209 SF3B2Q13435 895 aaKnown RBP22.3■■□□□ 1.16
PDZRN3-207ENST00000478209 OVOS2A0A0G2JMS6 1433 aa22.3■■□□□ 1.16
PDZRN3-207ENST00000478209 USHBP1Q8N6Y0 703 aa22.29■■□□□ 1.16
PDZRN3-207ENST00000478209 RAPGEF4Q8WZA2 1011 aa22.28■■□□□ 1.16
PDZRN3-207ENST00000478209 EIF4A2Q14240 407 aaKnown RBP22.27■■□□□ 1.16
PDZRN3-207ENST00000478209 MTHFSP49914 203 aa22.26■■□□□ 1.15
PDZRN3-207ENST00000478209 MEGF6O75095 1541 aa22.26■■□□□ 1.15
PDZRN3-207ENST00000478209 RGPD1P0DJD0 1748 aa22.26■■□□□ 1.15
PDZRN3-207ENST00000478209 TATP17735 454 aaPredicted RBP22.25■■□□□ 1.15
PDZRN3-207ENST00000478209 DDX10Q13206 875 aaKnown RBP22.25■■□□□ 1.15
PDZRN3-207ENST00000478209 MARCH10Q8NA82 808 aaPredicted RBP22.25■■□□□ 1.15
PDZRN3-207ENST00000478209 EYA1Q99502 592 aa22.25■■□□□ 1.15
PDZRN3-207ENST00000478209 NCAPD2Q15021 1401 aa22.23■■□□□ 1.15
PDZRN3-207ENST00000478209 TRIM37O94972 964 aa22.22■■□□□ 1.15
PDZRN3-207ENST00000478209 ZCRB1Q8TBF4 217 aaKnown RBP22.22■■□□□ 1.15
PDZRN3-207ENST00000478209 IGSF1Q8N6C5 1336 aa22.21■■□□□ 1.15
PDZRN3-207ENST00000478209 BCL9O00512 1426 aa22.21■■□□□ 1.15
PDZRN3-207ENST00000478209 BAG6P46379 1132 aa22.2■■□□□ 1.14
PDZRN3-207ENST00000478209 DDX54Q8TDD1 881 aaKnown RBP22.19■■□□□ 1.14
PDZRN3-207ENST00000478209 TNS1Q9HBL0 1735 aaKnown RBP22.19■■□□□ 1.14
PDZRN3-207ENST00000478209 EP400Q96L91 3159 aa22.18■■□□□ 1.14
PDZRN3-207ENST00000478209 IL13P35225 146 aa22.17■■□□□ 1.14
PDZRN3-207ENST00000478209 SBF2Q86WG5 1849 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms