RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SPATA31A1Q5TZJ5 1347 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 RRBP1Q9P2E9 1410 aaKnown RBP8.03□□□□□ -1.12
PTPN4-209ENST00000469511 SBF2Q86WG5 1849 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 CHD4Q14839 1912 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 CASZ1Q86V15 1759 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 KCNQ2O43526 872 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 PTF1AQ7RTS3 328 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 KIF12Q96FN5 646 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 TSHZ2Q9NRE2 1034 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 USP35Q9P2H5 1018 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 PCDHB8Q9UN66 801 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 PCDHB13Q9Y5F0 798 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 PRR36Q9H6K5 1346 aa8.03□□□□□ -1.12
PTPN4-209ENST00000469511 MYOM1P52179 1685 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 ADGRB2O60241 1585 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 NRKQ7Z2Y5 1582 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 ARHGEF10O15013 1369 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 SENP3-EIF4A1A0A087X0R7 540 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 CD44P16070 742 aaKnown RBP8.02□□□□□ -1.13
PTPN4-209ENST00000469511 CFAP70Q5T0N1 1121 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 IFFO2Q5TF58 517 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 FAM196AQ6ZSG2 479 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 SPON1Q9HCB6 807 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 ANO8Q9HCE9 1232 aaPredicted RBP8.02□□□□□ -1.13
PTPN4-209ENST00000469511 STRN4Q9NRL3 753 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 RYDENQ9NUL5 291 aaKnown RBP8.02□□□□□ -1.13
PTPN4-209ENST00000469511 PPP1R1BQ9UD71 204 aaPredicted RBP8.02□□□□□ -1.13
PTPN4-209ENST00000469511 KDM2AQ9Y2K7 1162 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 SPATA31E1Q6ZUB1 1445 aa8.02□□□□□ -1.13
PTPN4-209ENST00000469511 PHRF1Q9P1Y6 1649 aaKnown RBP8.01□□□□□ -1.13
PTPN4-209ENST00000469511 NUTM2GQ5VZR2 741 aa8.01□□□□□ -1.13
PTPN4-209ENST00000469511 PRAM1Q96QH2 718 aa8.01□□□□□ -1.13
PTPN4-209ENST00000469511 HIRIP3Q9BW71 556 aaPredicted RBP8.01□□□□□ -1.13
PTPN4-209ENST00000469511 PIK3C2GO75747 1445 aa8.01□□□□□ -1.13
PTPN4-209ENST00000469511 KIAA0232Q92628 1395 aa8□□□□□ -1.13
PTPN4-209ENST00000469511 MAP3K13O43283 966 aa8□□□□□ -1.13
PTPN4-209ENST00000469511 ZC3H6P61129 1189 aaKnown RBP8□□□□□ -1.13
PTPN4-209ENST00000469511 IFNL1Q8IU54 200 aa8□□□□□ -1.13
PTPN4-209ENST00000469511 PRDM11Q9NQV5 511 aa8□□□□□ -1.13
PTPN4-209ENST00000469511 NINLQ9Y2I6 1382 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 ZBTB7AO95365 584 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 PTGER2P43116 358 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 PSEN1P49768 467 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 C1QTNF8P60827 252 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 NBPF8Q3BBV2 869 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 NBPF14Q5TI25 921 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 SIRT1Q96EB6 747 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 PEAK1Q9H792 1746 aa7.99□□□□□ -1.13
PTPN4-209ENST00000469511 C14orf93Q9H972 538 aaKnown RBP7.99□□□□□ -1.13
PTPN4-209ENST00000469511 ACIN1Q9UKV3 1341 aaKnown RBP7.99□□□□□ -1.13
PTPN4-209ENST00000469511 PARD3Q8TEW0 1356 aa7.98□□□□□ -1.13
PTPN4-209ENST00000469511 C19orf67A6NJJ6 358 aa7.98□□□□□ -1.13
PTPN4-209ENST00000469511 LARP1Q6PKG0 1096 aaKnown RBP7.98□□□□□ -1.13
PTPN4-209ENST00000469511 PDE3BQ13370 1112 aa7.97□□□□□ -1.13
PTPN4-209ENST00000469511 MINK1Q8N4C8 1332 aaPredicted RBP7.97□□□□□ -1.13
PTPN4-209ENST00000469511 ANKRD30BQ9BXX2 1392 aa7.97□□□□□ -1.13
PTPN4-209ENST00000469511 SSH2Q76I76 1423 aa7.96□□□□□ -1.13
PTPN4-209ENST00000469511 ANKARQ7Z5J8 1434 aa7.96□□□□□ -1.13
PTPN4-209ENST00000469511 LMO7Q8WWI1 1683 aa7.96□□□□□ -1.13
PTPN4-209ENST00000469511 PARP4Q9UKK3 1724 aaKnown RBP7.96□□□□□ -1.14
PTPN4-209ENST00000469511 POGKQ9P215 609 aa7.96□□□□□ -1.14
PTPN4-209ENST00000469511 UTRNP46939 3433 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 BARGINQ6ZT62 677 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 PHF12Q96QT6 1004 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 SYT17Q9BSW7 474 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 FHDC1Q9C0D6 1143 aaPredicted RBP7.95□□□□□ -1.14
PTPN4-209ENST00000469511 TRAK1Q9UPV9 953 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 GPRASP1Q5JY77 1395 aa7.95□□□□□ -1.14
PTPN4-209ENST00000469511 DHX57Q6P158 1386 aaKnown RBP7.95□□□□□ -1.14
PTPN4-209ENST00000469511 RGPD3A6NKT7 1758 aaPredicted RBP7.94□□□□□ -1.14
PTPN4-209ENST00000469511 RGPD4Q7Z3J3 1758 aa7.94□□□□□ -1.14
PTPN4-209ENST00000469511 RGPD5Q99666 1765 aa7.94□□□□□ -1.14
PTPN4-209ENST00000469511 EVA1CP58658 441 aa7.94□□□□□ -1.14
PTPN4-209ENST00000469511 NGDNQ8NEJ9 315 aaKnown RBP7.94□□□□□ -1.14
PTPN4-209ENST00000469511 DLC1Q96QB1 1528 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 TULP4Q9NRJ4 1543 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 ADGRB1O14514 1584 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 KAT6BQ8WYB5 2073 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 LRRC37A3O60309 1634 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 WASLO00401 505 aaPredicted RBP7.93□□□□□ -1.14
PTPN4-209ENST00000469511 TCP11L2Q8N4U5 519 aa7.93□□□□□ -1.14
PTPN4-209ENST00000469511 PLSCR1O15162 318 aa7.92□□□□□ -1.14
PTPN4-209ENST00000469511 MPHOSPH9Q99550 1183 aa7.92□□□□□ -1.14
PTPN4-209ENST00000469511 AKAP12Q02952 1782 aa7.92□□□□□ -1.14
PTPN4-209ENST00000469511 WNK3Q9BYP7 1800 aa7.92□□□□□ -1.14
PTPN4-209ENST00000469511 MARCH10Q8NA82 808 aaPredicted RBP7.91□□□□□ -1.14
PTPN4-209ENST00000469511 NUDT16Q96DE0 195 aaKnown RBP7.91□□□□□ -1.14
PTPN4-209ENST00000469511 ATP7BP35670 1465 aa7.91□□□□□ -1.14
PTPN4-209ENST00000469511 ITSN1Q15811 1721 aa7.91□□□□□ -1.14
PTPN4-209ENST00000469511 SHANK3Q9BYB0 1731 aa7.91□□□□□ -1.14
PTPN4-209ENST00000469511 COL18A1P39060 1754 aa7.9□□□□□ -1.14
PTPN4-209ENST00000469511 ARHGEF28Q8N1W1 1705 aaKnown RBP7.9□□□□□ -1.14
PTPN4-209ENST00000469511 COL5A2P05997 1499 aaPredicted RBP7.9□□□□□ -1.14
PTPN4-209ENST00000469511 ZBTB7CA1YPR0 619 aa7.9□□□□□ -1.14
PTPN4-209ENST00000469511 MFRPQ9BY79 579 aa7.9□□□□□ -1.14
PTPN4-209ENST00000469511 TOPAZ1Q8N9V7 1692 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 OVOS2A0A0G2JMS6 1433 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 OVOS2A0A0J9YW53 1432 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 OVOS2Q6IE36 1432 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 ACEP12821 1306 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 184.5 ms