RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 IP6K1Q92551 441 aa27.51■■□□□ 1.99
NPHP4-206ENST00000468253 THRAP3Q9Y2W1 955 aaKnown RBP27.51■■□□□ 1.99
NPHP4-206ENST00000468253 KNSTRNQ9Y448 316 aa27.51■■□□□ 1.99
NPHP4-206ENST00000468253 PLCH1Q4KWH8 1693 aa27.51■■□□□ 1.99
NPHP4-206ENST00000468253 BARGINQ6ZT62 677 aa27.49■■□□□ 1.99
NPHP4-206ENST00000468253 SEPT12Q8IYM1 358 aa27.48■■□□□ 1.99
NPHP4-206ENST00000468253 COL5A2P05997 1499 aaPredicted RBP27.48■■□□□ 1.99
NPHP4-206ENST00000468253 LMO7Q8WWI1 1683 aa27.48■■□□□ 1.99
NPHP4-206ENST00000468253 RGS12O14924 1447 aa27.48■■□□□ 1.99
NPHP4-206ENST00000468253 WDR17Q8IZU2 1322 aa27.47■■□□□ 1.99
NPHP4-206ENST00000468253 PER1O15534 1290 aaPredicted RBP27.47■■□□□ 1.99
NPHP4-206ENST00000468253 TCP11L2Q8N4U5 519 aa27.47■■□□□ 1.99
NPHP4-206ENST00000468253 ABCC6O95255 1503 aa27.46■■□□□ 1.99
NPHP4-206ENST00000468253 MAP3K19Q56UN5 1328 aa27.46■■□□□ 1.99
NPHP4-206ENST00000468253 FAM98CQ17RN3 349 aaKnown RBP27.46■■□□□ 1.99
NPHP4-206ENST00000468253 NRAPQ86VF7 1730 aa27.45■■□□□ 1.99
NPHP4-206ENST00000468253 GLI3P10071 1580 aa27.45■■□□□ 1.99
NPHP4-206ENST00000468253 FBLN1P23142 703 aa27.45■■□□□ 1.98
NPHP4-206ENST00000468253 CARD10Q9BWT7 1032 aa27.45■■□□□ 1.98
NPHP4-206ENST00000468253 NSD2O96028 1365 aa27.45■■□□□ 1.98
NPHP4-206ENST00000468253 AMPHP49418 695 aa27.44■■□□□ 1.98
NPHP4-206ENST00000468253 TOM1L2Q6ZVM7 507 aa27.44■■□□□ 1.98
NPHP4-206ENST00000468253 CRB1P82279 1406 aa27.43■■□□□ 1.98
NPHP4-206ENST00000468253 COL18A1P39060 1754 aa27.43■■□□□ 1.98
NPHP4-206ENST00000468253 AMER1Q5JTC6 1135 aaPredicted RBP27.42■■□□□ 1.98
NPHP4-206ENST00000468253 KIF24Q5T7B8 1368 aa27.42■■□□□ 1.98
NPHP4-206ENST00000468253 CSB-PGBD3P0DP91 1061 aa27.41■■□□□ 1.98
NPHP4-206ENST00000468253 HOXC9P31274 260 aa27.41■■□□□ 1.98
NPHP4-206ENST00000468253 RRS1Q15050 365 aaKnown RBP27.41■■□□□ 1.98
NPHP4-206ENST00000468253 USP35Q9P2H5 1018 aa27.41■■□□□ 1.98
NPHP4-206ENST00000468253 BLMP54132 1417 aaPredicted RBP27.41■■□□□ 1.98
NPHP4-206ENST00000468253 ERBB3P21860 1342 aa27.41■■□□□ 1.98
NPHP4-206ENST00000468253 ANKRD24Q8TF21 1146 aa27.4■■□□□ 1.98
NPHP4-206ENST00000468253 RTL1A6NKG5 1358 aa27.38■■□□□ 1.97
NPHP4-206ENST00000468253 CDCA7Q9BWT1 371 aaPredicted RBP27.38■■□□□ 1.97
NPHP4-206ENST00000468253 KRT27Q7Z3Y8 459 aa27.37■■□□□ 1.97
NPHP4-206ENST00000468253 MORC1Q86VD1 984 aa27.37■■□□□ 1.97
NPHP4-206ENST00000468253 A0A0G2JS52 829 aa27.35■■□□□ 1.97
NPHP4-206ENST00000468253 MYT1Q01538 1121 aa27.35■■□□□ 1.97
NPHP4-206ENST00000468253 POLKQ9UBT6 870 aa27.35■■□□□ 1.97
NPHP4-206ENST00000468253 NLRP2Q9NX02 1062 aa27.34■■□□□ 1.97
NPHP4-206ENST00000468253 NPC1L1Q9UHC9 1359 aa27.34■■□□□ 1.97
NPHP4-206ENST00000468253 UPF1Q92900 1129 aaKnown RBP eCLIP27.33■■□□□ 1.97
NPHP4-206ENST00000468253 INSRP06213 1382 aa27.33■■□□□ 1.97
NPHP4-206ENST00000468253 EMILIN1Q9Y6C2 1016 aa27.32■■□□□ 1.96
NPHP4-206ENST00000468253 FLT4P35916 1363 aa27.32■■□□□ 1.96
NPHP4-206ENST00000468253 HSP90AB2PQ58FF8 381 aa27.31■■□□□ 1.96
NPHP4-206ENST00000468253 KIF20BQ96Q89 1820 aa27.3■■□□□ 1.96
NPHP4-206ENST00000468253 PDE3BQ13370 1112 aa27.29■■□□□ 1.96
NPHP4-206ENST00000468253 CCDC125Q86Z20 511 aa27.29■■□□□ 1.96
NPHP4-206ENST00000468253 LTV1Q96GA3 475 aaPredicted RBP27.29■■□□□ 1.96
NPHP4-206ENST00000468253 TNNT2P45379 298 aaPredicted RBP27.28■■□□□ 1.96
NPHP4-206ENST00000468253 PPM1GO15355 546 aaPredicted RBP27.26■■□□□ 1.95
NPHP4-206ENST00000468253 LTN1O94822 1766 aa27.25■■□□□ 1.95
NPHP4-206ENST00000468253 EXOC5O00471 708 aa27.24■■□□□ 1.95
NPHP4-206ENST00000468253 DDB1Q16531 1140 aa27.24■■□□□ 1.95
NPHP4-206ENST00000468253 THSD7AQ9UPZ6 1657 aa27.24■■□□□ 1.95
NPHP4-206ENST00000468253 IL2RBP14784 551 aa27.23■■□□□ 1.95
NPHP4-206ENST00000468253 CC2D1BQ5T0F9 858 aaKnown RBP27.23■■□□□ 1.95
NPHP4-206ENST00000468253 NBPF6Q5VWK0 638 aa27.23■■□□□ 1.95
NPHP4-206ENST00000468253 FAM196AQ6ZSG2 479 aa27.23■■□□□ 1.95
NPHP4-206ENST00000468253 NBPF4Q96M43 638 aa27.23■■□□□ 1.95
NPHP4-206ENST00000468253 DISP2A7MBM2 1401 aa27.22■■□□□ 1.95
NPHP4-206ENST00000468253 SMG6Q86US8 1419 aaKnown RBP27.22■■□□□ 1.95
NPHP4-206ENST00000468253 RGPD5Q99666 1765 aa27.22■■□□□ 1.95
NPHP4-206ENST00000468253 ANKRD26Q9UPS8 1709 aa27.16■■□□□ 1.94
NPHP4-206ENST00000468253 MTHFSP49914 203 aa27.15■■□□□ 1.94
NPHP4-206ENST00000468253 EIF4A2Q14240 407 aaKnown RBP27.14■■□□□ 1.94
NPHP4-206ENST00000468253 FAM182BQ5T319 152 aa27.14■■□□□ 1.94
NPHP4-206ENST00000468253 MARCH10Q8NA82 808 aaPredicted RBP27.14■■□□□ 1.94
NPHP4-206ENST00000468253 EYA1Q99502 592 aa27.14■■□□□ 1.94
NPHP4-206ENST00000468253 BRWD3Q6RI45 1802 aa27.13■■□□□ 1.93
NPHP4-206ENST00000468253 PEAK1Q9H792 1746 aa27.13■■□□□ 1.93
NPHP4-206ENST00000468253 MAP2P11137 1827 aaKnown RBP27.12■■□□□ 1.93
NPHP4-206ENST00000468253 DDX10Q13206 875 aaKnown RBP27.12■■□□□ 1.93
NPHP4-206ENST00000468253 RAPGEF4Q8WZA2 1011 aa27.12■■□□□ 1.93
NPHP4-206ENST00000468253 EP400Q96L91 3159 aa27.12■■□□□ 1.93
NPHP4-206ENST00000468253 PARP4Q9UKK3 1724 aaKnown RBP27.1■■□□□ 1.93
NPHP4-206ENST00000468253 BCL9O00512 1426 aa27.1■■□□□ 1.93
NPHP4-206ENST00000468253 SF3B2Q13435 895 aaKnown RBP27.1■■□□□ 1.93
NPHP4-206ENST00000468253 TATP17735 454 aaPredicted RBP27.09■■□□□ 1.93
NPHP4-206ENST00000468253 ZCRB1Q8TBF4 217 aaKnown RBP27.09■■□□□ 1.93
NPHP4-206ENST00000468253 FAM208AQ9UK61 1670 aaKnown RBP27.08■■□□□ 1.93
NPHP4-206ENST00000468253 USHBP1Q8N6Y0 703 aa27.08■■□□□ 1.93
NPHP4-206ENST00000468253 NCAPD2Q15021 1401 aa27.07■■□□□ 1.92
NPHP4-206ENST00000468253 IL13P35225 146 aa27.07■■□□□ 1.92
NPHP4-206ENST00000468253 OVOS2A0A0G2JMS6 1433 aa27.06■■□□□ 1.92
NPHP4-206ENST00000468253 TNS2Q63HR2 1409 aa27.06■■□□□ 1.92
NPHP4-206ENST00000468253 CNGB1Q14028 1251 aaPredicted RBP27.05■■□□□ 1.92
NPHP4-206ENST00000468253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.05■■□□□ 1.92
NPHP4-206ENST00000468253 IGSF1Q8N6C5 1336 aa27.05■■□□□ 1.92
NPHP4-206ENST00000468253 TRIM37O94972 964 aa27.04■■□□□ 1.92
NPHP4-206ENST00000468253 ZNF316A6NFI3 1004 aaPredicted RBP27.03■■□□□ 1.92
NPHP4-206ENST00000468253 PPP2R1AP30153 589 aa27.02■■□□□ 1.92
NPHP4-206ENST00000468253 DDX54Q8TDD1 881 aaKnown RBP27.02■■□□□ 1.92
NPHP4-206ENST00000468253 BCL11BQ9C0K0 894 aaPredicted RBP27.02■■□□□ 1.92
NPHP4-206ENST00000468253 PLEKHG2Q9H7P9 1386 aa27.01■■□□□ 1.91
NPHP4-206ENST00000468253 DIAPH1O60610 1272 aaKnown RBP27.01■■□□□ 1.91
NPHP4-206ENST00000468253 BAG6P46379 1132 aa27■■□□□ 1.91
NPHP4-206ENST00000468253 LRRC37A3O60309 1634 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms