RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CGNL1Q0VF96 1302 aa16.38■□□□□ 0.21
VPS52-213ENST00000461743 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
VPS52-213ENST00000461743 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
VPS52-213ENST00000461743 CRB1P82279 1406 aa16.37■□□□□ 0.21
VPS52-213ENST00000461743 POLR3GLQ9BT43 218 aa16.37■□□□□ 0.21
VPS52-213ENST00000461743 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
VPS52-213ENST00000461743 FYB1O15117 783 aa16.36■□□□□ 0.21
VPS52-213ENST00000461743 CARD14Q9BXL6 1004 aa16.36■□□□□ 0.21
VPS52-213ENST00000461743 ZRANB1Q9UGI0 708 aa16.36■□□□□ 0.21
VPS52-213ENST00000461743 KIF24Q5T7B8 1368 aa16.36■□□□□ 0.21
VPS52-213ENST00000461743 PEAK1Q9H792 1746 aa16.36■□□□□ 0.21
VPS52-213ENST00000461743 LRRC37A3O60309 1634 aa16.35■□□□□ 0.21
VPS52-213ENST00000461743 C11orf95C9JLR9 678 aaPredicted RBP16.35■□□□□ 0.21
VPS52-213ENST00000461743 SPATA31A1Q5TZJ5 1347 aa16.35■□□□□ 0.21
VPS52-213ENST00000461743 ONECUT3O60422 494 aaPredicted RBP16.34■□□□□ 0.21
VPS52-213ENST00000461743 ZEB1P37275 1124 aaPredicted RBP16.34■□□□□ 0.21
VPS52-213ENST00000461743 CCDC9Q9Y3X0 531 aaKnown RBP16.34■□□□□ 0.21
VPS52-213ENST00000461743 RGPD2P0DJD1 1756 aa16.33■□□□□ 0.21
VPS52-213ENST00000461743 WDR17Q8IZU2 1322 aa16.33■□□□□ 0.2
VPS52-213ENST00000461743 SOX12O15370 315 aa16.32■□□□□ 0.2
VPS52-213ENST00000461743 RGPD1P0DJD0 1748 aa16.32■□□□□ 0.2
VPS52-213ENST00000461743 EVA1CP58658 441 aa16.32■□□□□ 0.2
VPS52-213ENST00000461743 GGNBP2Q9H3C7 697 aa16.32■□□□□ 0.2
VPS52-213ENST00000461743 STRN4Q9NRL3 753 aa16.32■□□□□ 0.2
VPS52-213ENST00000461743 THRAP3Q9Y2W1 955 aaKnown RBP16.32■□□□□ 0.2
VPS52-213ENST00000461743 WASHC2AQ641Q2 1341 aa16.31■□□□□ 0.2
VPS52-213ENST00000461743 ZBTB7CA1YPR0 619 aa16.31■□□□□ 0.2
VPS52-213ENST00000461743 BARGINQ6ZT62 677 aa16.31■□□□□ 0.2
VPS52-213ENST00000461743 PANK3Q9H999 370 aa16.31■□□□□ 0.2
VPS52-213ENST00000461743 ERBB3P21860 1342 aa16.3■□□□□ 0.2
VPS52-213ENST00000461743 SMG6Q86US8 1419 aaKnown RBP16.29■□□□□ 0.2
VPS52-213ENST00000461743 FLT4P35916 1363 aa16.29■□□□□ 0.2
VPS52-213ENST00000461743 MAP3K19Q56UN5 1328 aa16.29■□□□□ 0.2
VPS52-213ENST00000461743 LARP1Q6PKG0 1096 aaKnown RBP16.29■□□□□ 0.2
VPS52-213ENST00000461743 TCP11L2Q8N4U5 519 aa16.29■□□□□ 0.2
VPS52-213ENST00000461743 IP6K1Q92551 441 aa16.28■□□□□ 0.2
VPS52-213ENST00000461743 AXIN2Q9Y2T1 843 aa16.28■□□□□ 0.2
VPS52-213ENST00000461743 NPC1L1Q9UHC9 1359 aa16.27■□□□□ 0.2
VPS52-213ENST00000461743 SBF2Q86WG5 1849 aa16.27■□□□□ 0.2
VPS52-213ENST00000461743 FAM98CQ17RN3 349 aaKnown RBP16.27■□□□□ 0.2
VPS52-213ENST00000461743 SEPT12Q8IYM1 358 aa16.27■□□□□ 0.2
VPS52-213ENST00000461743 KNSTRNQ9Y448 316 aa16.27■□□□□ 0.2
VPS52-213ENST00000461743 DISP2A7MBM2 1401 aa16.27■□□□□ 0.19
VPS52-213ENST00000461743 TNS1Q9HBL0 1735 aaKnown RBP16.26■□□□□ 0.19
VPS52-213ENST00000461743 TOM1L2Q6ZVM7 507 aa16.26■□□□□ 0.19
VPS52-213ENST00000461743 CDCA7Q9BWT1 371 aaPredicted RBP16.26■□□□□ 0.19
VPS52-213ENST00000461743 CARD10Q9BWT7 1032 aa16.26■□□□□ 0.19
VPS52-213ENST00000461743 INSRP06213 1382 aa16.26■□□□□ 0.19
VPS52-213ENST00000461743 HOXC9P31274 260 aa16.25■□□□□ 0.19
VPS52-213ENST00000461743 AMPHP49418 695 aa16.25■□□□□ 0.19
VPS52-213ENST00000461743 SHANK3Q9BYB0 1731 aa16.25■□□□□ 0.19
VPS52-213ENST00000461743 CSB-PGBD3P0DP91 1061 aa16.24■□□□□ 0.19
VPS52-213ENST00000461743 ANKRD24Q8TF21 1146 aa16.24■□□□□ 0.19
VPS52-213ENST00000461743 TNS2Q63HR2 1409 aa16.23■□□□□ 0.19
VPS52-213ENST00000461743 A0A0G2JS52 829 aa16.23■□□□□ 0.19
VPS52-213ENST00000461743 MYT1Q01538 1121 aa16.23■□□□□ 0.19
VPS52-213ENST00000461743 AMER1Q5JTC6 1135 aaPredicted RBP16.23■□□□□ 0.19
VPS52-213ENST00000461743 KRT27Q7Z3Y8 459 aa16.23■□□□□ 0.19
VPS52-213ENST00000461743 PKD1L3Q7Z443 1732 aa16.22■□□□□ 0.19
VPS52-213ENST00000461743 RRS1Q15050 365 aaKnown RBP16.22■□□□□ 0.19
VPS52-213ENST00000461743 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
VPS52-213ENST00000461743 RGPD3A6NKT7 1758 aaPredicted RBP16.22■□□□□ 0.19
VPS52-213ENST00000461743 RGPD4Q7Z3J3 1758 aa16.22■□□□□ 0.19
VPS52-213ENST00000461743 NCAPD2Q15021 1401 aa16.21■□□□□ 0.19
VPS52-213ENST00000461743 PER1O15534 1290 aaPredicted RBP16.21■□□□□ 0.19
VPS52-213ENST00000461743 OVOS2A0A0G2JMS6 1433 aa16.19■□□□□ 0.18
VPS52-213ENST00000461743 MORC1Q86VD1 984 aa16.19■□□□□ 0.18
VPS52-213ENST00000461743 UPF1Q92900 1129 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS52-213ENST00000461743 BCL9O00512 1426 aa16.19■□□□□ 0.18
VPS52-213ENST00000461743 NHSQ6T4R5 1651 aa16.18■□□□□ 0.18
VPS52-213ENST00000461743 PLEKHG2Q9H7P9 1386 aa16.18■□□□□ 0.18
VPS52-213ENST00000461743 CCDC125Q86Z20 511 aa16.18■□□□□ 0.18
VPS52-213ENST00000461743 NLRP2Q9NX02 1062 aa16.18■□□□□ 0.18
VPS52-213ENST00000461743 EMILIN1Q9Y6C2 1016 aa16.18■□□□□ 0.18
VPS52-213ENST00000461743 FBLN1P23142 703 aa16.17■□□□□ 0.18
VPS52-213ENST00000461743 POLKQ9UBT6 870 aa16.16■□□□□ 0.18
VPS52-213ENST00000461743 IL2RBP14784 551 aa16.15■□□□□ 0.18
VPS52-213ENST00000461743 PDE3BQ13370 1112 aa16.15■□□□□ 0.18
VPS52-213ENST00000461743 DDB1Q16531 1140 aa16.15■□□□□ 0.18
VPS52-213ENST00000461743 HSP90AB2PQ58FF8 381 aa16.15■□□□□ 0.18
VPS52-213ENST00000461743 MEGF6O75095 1541 aa16.14■□□□□ 0.18
VPS52-213ENST00000461743 DOT1LQ8TEK3 1739 aa16.14■□□□□ 0.17
VPS52-213ENST00000461743 RREB1Q92766 1687 aa16.14■□□□□ 0.17
VPS52-213ENST00000461743 KAT6BQ8WYB5 2073 aa16.14■□□□□ 0.17
VPS52-213ENST00000461743 FAM196AQ6ZSG2 479 aa16.13■□□□□ 0.17
VPS52-213ENST00000461743 LTV1Q96GA3 475 aaPredicted RBP16.13■□□□□ 0.17
VPS52-213ENST00000461743 TNNT2P45379 298 aaPredicted RBP16.12■□□□□ 0.17
VPS52-213ENST00000461743 VIRMAQ69YN4 1812 aaKnown RBP16.11■□□□□ 0.17
VPS52-213ENST00000461743 PPM1GO15355 546 aaPredicted RBP16.11■□□□□ 0.17
VPS52-213ENST00000461743 BTAF1O14981 1849 aa16.1■□□□□ 0.17
VPS52-213ENST00000461743 EXOC5O00471 708 aa16.1■□□□□ 0.17
VPS52-213ENST00000461743 NBPF6Q5VWK0 638 aa16.1■□□□□ 0.17
VPS52-213ENST00000461743 NBPF4Q96M43 638 aa16.1■□□□□ 0.17
VPS52-213ENST00000461743 COL3A1P02461 1466 aaPredicted RBP16.1■□□□□ 0.17
VPS52-213ENST00000461743 SF3B2Q13435 895 aaKnown RBP16.09■□□□□ 0.17
VPS52-213ENST00000461743 CC2D1BQ5T0F9 858 aaKnown RBP16.09■□□□□ 0.17
VPS52-213ENST00000461743 ITGB4P16144 1822 aa16.08■□□□□ 0.17
VPS52-213ENST00000461743 EIF4A2Q14240 407 aaKnown RBP16.08■□□□□ 0.16
VPS52-213ENST00000461743 RAPGEF4Q8WZA2 1011 aa16.08■□□□□ 0.16
VPS52-213ENST00000461743 IGSF1Q8N6C5 1336 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms