RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 HSPA1LP34931 641 aa16.69■□□□□ 0.26
TRIM39-207ENST00000428404 AXIN2Q9Y2T1 843 aa16.69■□□□□ 0.26
TRIM39-207ENST00000428404 JCADQ9P266 1359 aa16.68■□□□□ 0.26
TRIM39-207ENST00000428404 LTN1O94822 1766 aa16.68■□□□□ 0.26
TRIM39-207ENST00000428404 ABCA3Q99758 1704 aa16.67■□□□□ 0.26
TRIM39-207ENST00000428404 ABCC6O95255 1503 aa16.67■□□□□ 0.26
TRIM39-207ENST00000428404 BLMP54132 1417 aaPredicted RBP16.67■□□□□ 0.26
TRIM39-207ENST00000428404 COL18A1P39060 1754 aa16.66■□□□□ 0.26
TRIM39-207ENST00000428404 U2AF1L5P0DN76 240 aaPredicted RBP16.66■□□□□ 0.26
TRIM39-207ENST00000428404 HAP1P54257 671 aaPredicted RBP16.66■□□□□ 0.26
TRIM39-207ENST00000428404 U2AF1Q01081 240 aaKnown RBP eCLIP16.66■□□□□ 0.26
TRIM39-207ENST00000428404 ZBTB7CA1YPR0 619 aa16.65■□□□□ 0.26
TRIM39-207ENST00000428404 FAM83GA6ND36 823 aa16.65■□□□□ 0.26
TRIM39-207ENST00000428404 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
TRIM39-207ENST00000428404 FCHSD2O94868 740 aa16.65■□□□□ 0.26
TRIM39-207ENST00000428404 CHRNA2Q15822 529 aa16.65■□□□□ 0.26
TRIM39-207ENST00000428404 PRDM11Q9NQV5 511 aa16.65■□□□□ 0.26
TRIM39-207ENST00000428404 EYA1Q99502 592 aa16.64■□□□□ 0.25
TRIM39-207ENST00000428404 ANKRD24Q8TF21 1146 aa16.63■□□□□ 0.25
TRIM39-207ENST00000428404 RSPH6AQ9H0K4 717 aa16.63■□□□□ 0.25
TRIM39-207ENST00000428404 IGSF1Q8N6C5 1336 aa16.63■□□□□ 0.25
TRIM39-207ENST00000428404 RGPD1P0DJD0 1748 aa16.62■□□□□ 0.25
TRIM39-207ENST00000428404 PLEKHF1Q96S99 279 aa16.62■□□□□ 0.25
TRIM39-207ENST00000428404 ERBB3P21860 1342 aa16.62■□□□□ 0.25
TRIM39-207ENST00000428404 RUNDC1Q96C34 613 aa16.61■□□□□ 0.25
TRIM39-207ENST00000428404 LTV1Q96GA3 475 aaPredicted RBP16.61■□□□□ 0.25
TRIM39-207ENST00000428404 LMO7Q8WWI1 1683 aa16.61■□□□□ 0.25
TRIM39-207ENST00000428404 CAMTA1Q9Y6Y1 1673 aa16.61■□□□□ 0.25
TRIM39-207ENST00000428404 SPATA31A6Q5VVP1 1343 aa16.61■□□□□ 0.25
TRIM39-207ENST00000428404 KDRP35968 1356 aa16.61■□□□□ 0.25
TRIM39-207ENST00000428404 NBPF6Q5VWK0 638 aa16.6■□□□□ 0.25
TRIM39-207ENST00000428404 NBPF4Q96M43 638 aa16.6■□□□□ 0.25
TRIM39-207ENST00000428404 NCAPD2Q15021 1401 aa16.6■□□□□ 0.25
TRIM39-207ENST00000428404 HMOX1P09601 288 aa16.59■□□□□ 0.25
TRIM39-207ENST00000428404 SULT6B1Q6IMI4 303 aa16.59■□□□□ 0.25
TRIM39-207ENST00000428404 AEBP1Q8IUX7 1158 aa16.59■□□□□ 0.25
TRIM39-207ENST00000428404 CCDC146Q8IYE0 955 aa16.59■□□□□ 0.25
TRIM39-207ENST00000428404 YTHDC1Q96MU7 727 aaKnown RBP16.59■□□□□ 0.25
TRIM39-207ENST00000428404 PNNQ9H307 717 aaKnown RBP16.59■□□□□ 0.25
TRIM39-207ENST00000428404 NUTM2BA6NNL0 878 aaPredicted RBP16.58■□□□□ 0.24
TRIM39-207ENST00000428404 NUTM2EB1AL46 878 aaPredicted RBP16.58■□□□□ 0.24
TRIM39-207ENST00000428404 HNRNPUQ00839 825 aaKnown RBP eCLIP16.58■□□□□ 0.24
TRIM39-207ENST00000428404 NUTM2AQ8IVF1 878 aaPredicted RBP16.58■□□□□ 0.24
TRIM39-207ENST00000428404 COL5A2P05997 1499 aaPredicted RBP16.57■□□□□ 0.24
TRIM39-207ENST00000428404 ADAMTS2O95450 1211 aa16.57■□□□□ 0.24
TRIM39-207ENST00000428404 PRKAR2BP31323 418 aa16.57■□□□□ 0.24
TRIM39-207ENST00000428404 FBXO41Q8TF61 875 aa16.57■□□□□ 0.24
TRIM39-207ENST00000428404 COL14A1Q05707 1796 aaKnown RBP16.56■□□□□ 0.24
TRIM39-207ENST00000428404 RGPD5Q99666 1765 aa16.56■□□□□ 0.24
TRIM39-207ENST00000428404 WDR17Q8IZU2 1322 aa16.56■□□□□ 0.24
TRIM39-207ENST00000428404 APAF1O14727 1248 aa16.56■□□□□ 0.24
TRIM39-207ENST00000428404 NCBP3Q53F19 620 aaKnown RBP16.56■□□□□ 0.24
TRIM39-207ENST00000428404 PHACTR3Q96KR7 559 aa16.56■□□□□ 0.24
TRIM39-207ENST00000428404 TCP11L2Q8N4U5 519 aa16.55■□□□□ 0.24
TRIM39-207ENST00000428404 NGEFQ8N5V2 710 aa16.55■□□□□ 0.24
TRIM39-207ENST00000428404 BTG4Q9NY30 223 aa16.55■□□□□ 0.24
TRIM39-207ENST00000428404 NLRP2Q9NX02 1062 aa16.54■□□□□ 0.24
TRIM39-207ENST00000428404 LRP6O75581 1613 aa16.54■□□□□ 0.24
TRIM39-207ENST00000428404 ZBED9Q6R2W3 1325 aa16.53■□□□□ 0.24
TRIM39-207ENST00000428404 CSB-PGBD3P0DP91 1061 aa16.53■□□□□ 0.24
TRIM39-207ENST00000428404 USHBP1Q8N6Y0 703 aa16.53■□□□□ 0.24
TRIM39-207ENST00000428404 SLIT2O94813 1529 aa16.52■□□□□ 0.24
TRIM39-207ENST00000428404 TMPOP42166 694 aaKnown RBP16.52■□□□□ 0.24
TRIM39-207ENST00000428404 EVA1CP58658 441 aa16.52■□□□□ 0.24
TRIM39-207ENST00000428404 LARP1Q6PKG0 1096 aaKnown RBP16.52■□□□□ 0.24
TRIM39-207ENST00000428404 PHF23Q9BUL5 403 aaPredicted RBP16.52■□□□□ 0.24
TRIM39-207ENST00000428404 CARD10Q9BWT7 1032 aa16.52■□□□□ 0.24
TRIM39-207ENST00000428404 MAPK8IP3Q9UPT6 1336 aa16.51■□□□□ 0.23
TRIM39-207ENST00000428404 FNBP4Q8N3X1 1017 aaPredicted RBP16.51■□□□□ 0.23
TRIM39-207ENST00000428404 RGPD2P0DJD1 1756 aa16.51■□□□□ 0.23
TRIM39-207ENST00000428404 FAM208AQ9UK61 1670 aaKnown RBP16.5■□□□□ 0.23
TRIM39-207ENST00000428404 SENP3-EIF4A1A0A087X0R7 540 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 CCDC27Q2M243 656 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 TOM1L2Q6ZVM7 507 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 STRN4Q9NRL3 753 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 PLEKHG2Q9H7P9 1386 aa16.5■□□□□ 0.23
TRIM39-207ENST00000428404 ZNF521Q96K83 1311 aa16.49■□□□□ 0.23
TRIM39-207ENST00000428404 NEFMP07197 916 aa16.49■□□□□ 0.23
TRIM39-207ENST00000428404 CRB1P82279 1406 aa16.49■□□□□ 0.23
TRIM39-207ENST00000428404 NGLY1Q96IV0 654 aa16.49■□□□□ 0.23
TRIM39-207ENST00000428404 C8orf37Q96NL8 207 aa16.48■□□□□ 0.23
TRIM39-207ENST00000428404 RRP7AQ9Y3A4 280 aaKnown RBP16.48■□□□□ 0.23
TRIM39-207ENST00000428404 BCL9LQ86UU0 1499 aa16.48■□□□□ 0.23
TRIM39-207ENST00000428404 PLCH1Q4KWH8 1693 aa16.47■□□□□ 0.23
TRIM39-207ENST00000428404 MTHFSDQ2M296 383 aaKnown RBP16.47■□□□□ 0.23
TRIM39-207ENST00000428404 UNC5CLQ8IV45 518 aa16.47■□□□□ 0.23
TRIM39-207ENST00000428404 TRIM35Q9UPQ4 493 aa16.47■□□□□ 0.23
TRIM39-207ENST00000428404 NWD2Q9ULI1 1742 aa16.47■□□□□ 0.23
TRIM39-207ENST00000428404 NRAPQ86VF7 1730 aa16.46■□□□□ 0.23
TRIM39-207ENST00000428404 RIPK4P57078 832 aa16.46■□□□□ 0.23
TRIM39-207ENST00000428404 WWC1Q8IX03 1113 aa16.46■□□□□ 0.23
TRIM39-207ENST00000428404 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.46■□□□□ 0.23
TRIM39-207ENST00000428404 SALL2Q9Y467 1007 aaPredicted RBP16.46■□□□□ 0.23
TRIM39-207ENST00000428404 NEUROD2Q15784 382 aa16.45■□□□□ 0.22
TRIM39-207ENST00000428404 AMOTQ4VCS5 1084 aa16.45■□□□□ 0.22
TRIM39-207ENST00000428404 PLEKHO1Q53GL0 409 aaPredicted RBP16.45■□□□□ 0.22
TRIM39-207ENST00000428404 GAS2L2Q8NHY3 880 aa16.45■□□□□ 0.22
TRIM39-207ENST00000428404 RAPGEF4Q8WZA2 1011 aa16.45■□□□□ 0.22
TRIM39-207ENST00000428404 TATP17735 454 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms