RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 FAM181BA6NEQ2 426 aa12.27□□□□□ -0.45
LINC01040-201ENST00000425048 ARHGAP9Q9BRR9 750 aa12.27□□□□□ -0.45
LINC01040-201ENST00000425048 ERBB4Q15303 1308 aa12.27□□□□□ -0.45
LINC01040-201ENST00000425048 BCANQ96GW7 911 aa12.26□□□□□ -0.45
LINC01040-201ENST00000425048 TSEN34Q9BSV6 310 aaKnown RBP12.26□□□□□ -0.45
LINC01040-201ENST00000425048 NR6A1Q15406 480 aa12.25□□□□□ -0.45
LINC01040-201ENST00000425048 FBXO31Q5XUX0 539 aaPredicted RBP12.25□□□□□ -0.45
LINC01040-201ENST00000425048 ZBTB33Q86T24 672 aa12.25□□□□□ -0.45
LINC01040-201ENST00000425048 CDV3Q9UKY7 258 aaKnown RBP12.25□□□□□ -0.45
LINC01040-201ENST00000425048 ZC3H4Q9UPT8 1303 aaKnown RBP12.25□□□□□ -0.45
LINC01040-201ENST00000425048 ZSCAN1Q8NBB4 408 aa12.24□□□□□ -0.45
LINC01040-201ENST00000425048 PGPEP1Q9NXJ5 209 aa12.24□□□□□ -0.45
LINC01040-201ENST00000425048 AP1G2O75843 785 aa12.23□□□□□ -0.45
LINC01040-201ENST00000425048 SOS2Q07890 1332 aaPredicted RBP12.22□□□□□ -0.45
LINC01040-201ENST00000425048 PTK2Q05397 1052 aa12.22□□□□□ -0.45
LINC01040-201ENST00000425048 PPP1R26Q5T8A7 1209 aaPredicted RBP12.22□□□□□ -0.45
LINC01040-201ENST00000425048 SLC10A4Q96EP9 437 aa12.22□□□□□ -0.45
LINC01040-201ENST00000425048 KCTD15Q96SI1 283 aaPredicted RBP12.21□□□□□ -0.45
LINC01040-201ENST00000425048 VSIG8P0DPA2 414 aa12.2□□□□□ -0.46
LINC01040-201ENST00000425048 GPSM3Q9Y4H4 160 aa12.2□□□□□ -0.46
LINC01040-201ENST00000425048 LORP23490 312 aaPredicted RBP12.19□□□□□ -0.46
LINC01040-201ENST00000425048 DHX9Q08211 1270 aaKnown RBP12.19□□□□□ -0.46
LINC01040-201ENST00000425048 PNMA1Q8ND90 353 aa12.19□□□□□ -0.46
LINC01040-201ENST00000425048 PPFIA3O75145 1194 aa12.18□□□□□ -0.46
LINC01040-201ENST00000425048 DNMT3LQ9UJW3 386 aa12.18□□□□□ -0.46
LINC01040-201ENST00000425048 CBLBQ13191 982 aa12.17□□□□□ -0.46
LINC01040-201ENST00000425048 Q6ZVU0 165 aa12.17□□□□□ -0.46
LINC01040-201ENST00000425048 TTLL8A6PVC2 850 aa12.16□□□□□ -0.46
LINC01040-201ENST00000425048 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.16□□□□□ -0.46
LINC01040-201ENST00000425048 ADAM32Q8TC27 787 aa12.15□□□□□ -0.46
LINC01040-201ENST00000425048 OCSTAMPQ9BR26 566 aa12.15□□□□□ -0.46
LINC01040-201ENST00000425048 SPINT1O43278 529 aa12.13□□□□□ -0.47
LINC01040-201ENST00000425048 INTS6LQ5JSJ4 861 aaKnown RBP12.13□□□□□ -0.47
LINC01040-201ENST00000425048 EPS8L1Q8TE68 723 aa12.13□□□□□ -0.47
LINC01040-201ENST00000425048 FIGNL2A6NMB9 653 aa12.12□□□□□ -0.47
LINC01040-201ENST00000425048 USP17L8P0C7I0 530 aa12.12□□□□□ -0.47
LINC01040-201ENST00000425048 RFC5P40937 340 aa12.11□□□□□ -0.47
LINC01040-201ENST00000425048 NBPF20Q3BBV1 942 aa12.1□□□□□ -0.47
LINC01040-201ENST00000425048 GOPCQ9HD26 462 aa12.1□□□□□ -0.47
LINC01040-201ENST00000425048 HMX1Q9NP08 348 aaPredicted RBP12.1□□□□□ -0.47
LINC01040-201ENST00000425048 PTSQ03393 145 aa12.09□□□□□ -0.47
LINC01040-201ENST00000425048 DZIP3Q86Y13 1208 aaKnown RBP12.09□□□□□ -0.47
LINC01040-201ENST00000425048 PCMTD1Q96MG8 357 aaPredicted RBP12.08□□□□□ -0.48
LINC01040-201ENST00000425048 TMEM259Q4ZIN3 620 aa12.07□□□□□ -0.48
LINC01040-201ENST00000425048 AGBL1Q96MI9 1066 aa12.07□□□□□ -0.48
LINC01040-201ENST00000425048 RELBQ01201 579 aa12.06□□□□□ -0.48
LINC01040-201ENST00000425048 TMPRSS4Q9NRS4 437 aa12.05□□□□□ -0.48
LINC01040-201ENST00000425048 RAB15P59190 212 aa12.04□□□□□ -0.48
LINC01040-201ENST00000425048 CTSOP43234 321 aaPredicted RBP12.03□□□□□ -0.48
LINC01040-201ENST00000425048 CCDC155Q8N6L0 562 aa12.03□□□□□ -0.48
LINC01040-201ENST00000425048 INSM2Q96T92 566 aaPredicted RBP12.03□□□□□ -0.48
LINC01040-201ENST00000425048 ERVH48-1M5A8F1 160 aa12.02□□□□□ -0.49
LINC01040-201ENST00000425048 GPR161Q8N6U8 529 aaKnown RBP12.02□□□□□ -0.49
LINC01040-201ENST00000425048 ZNF784Q8NCA9 323 aaPredicted RBP12.02□□□□□ -0.49
LINC01040-201ENST00000425048 NANOS1Q8WY41 292 aaKnown RBP12.02□□□□□ -0.49
LINC01040-201ENST00000425048 TRIM52Q96A61 297 aa12.02□□□□□ -0.49
LINC01040-201ENST00000425048 ZNF395Q9H8N7 513 aaPredicted RBP12.02□□□□□ -0.49
LINC01040-201ENST00000425048 POLMQ9NP87 494 aaPredicted RBP12.02□□□□□ -0.49
LINC01040-201ENST00000425048 SLC35F4A4IF30 521 aa12.01□□□□□ -0.49
LINC01040-201ENST00000425048 TRIM34Q9BYJ4 488 aa12.01□□□□□ -0.49
LINC01040-201ENST00000425048 ESPNB1AK53 854 aa12□□□□□ -0.49
LINC01040-201ENST00000425048 ADD1P35611 737 aaKnown RBP12□□□□□ -0.49
LINC01040-201ENST00000425048 NEUROD2Q15784 382 aa12□□□□□ -0.49
LINC01040-201ENST00000425048 SEPT12Q8IYM1 358 aa12□□□□□ -0.49
LINC01040-201ENST00000425048 IL27Q8NEV9 243 aa12□□□□□ -0.49
LINC01040-201ENST00000425048 LILRA1O75019 489 aa11.99□□□□□ -0.49
LINC01040-201ENST00000425048 ADH1AP07327 375 aa11.99□□□□□ -0.49
LINC01040-201ENST00000425048 SLC24A1O60721 1099 aa11.98□□□□□ -0.49
LINC01040-201ENST00000425048 PTGIRP43119 386 aa11.98□□□□□ -0.49
LINC01040-201ENST00000425048 CNTNAP3BQ96NU0 1288 aa11.98□□□□□ -0.49
LINC01040-201ENST00000425048 CNTNAP3Q9BZ76 1288 aa11.98□□□□□ -0.49
LINC01040-201ENST00000425048 ZBBXA8MT70 800 aa11.96□□□□□ -0.49
LINC01040-201ENST00000425048 RNF217Q8TC41 542 aa11.96□□□□□ -0.49
LINC01040-201ENST00000425048 ITGA6P23229 1130 aa11.95□□□□□ -0.5
LINC01040-201ENST00000425048 KRT76Q01546 638 aa11.95□□□□□ -0.5
LINC01040-201ENST00000425048 VWA5B2Q8N398 1253 aa11.95□□□□□ -0.5
LINC01040-201ENST00000425048 COL25A1Q9BXS0 654 aaPredicted RBP11.95□□□□□ -0.5
LINC01040-201ENST00000425048 SV2AQ7L0J3 742 aa11.94□□□□□ -0.5
LINC01040-201ENST00000425048 KDF1Q8NAX2 398 aaPredicted RBP11.94□□□□□ -0.5
LINC01040-201ENST00000425048 PCDHB9Q9Y5E1 797 aa11.94□□□□□ -0.5
LINC01040-201ENST00000425048 CCDC125Q86Z20 511 aa11.93□□□□□ -0.5
LINC01040-201ENST00000425048 GIGYF1O75420 1035 aaPredicted RBP11.92□□□□□ -0.5
LINC01040-201ENST00000425048 GJD4Q96KN9 370 aaPredicted RBP11.92□□□□□ -0.5
LINC01040-201ENST00000425048 CYLDQ9NQC7 956 aa11.92□□□□□ -0.5
LINC01040-201ENST00000425048 CDC14CA4D256 554 aa11.91□□□□□ -0.5
LINC01040-201ENST00000425048 FBXO45P0C2W1 286 aa11.91□□□□□ -0.5
LINC01040-201ENST00000425048 FOXD4L5Q5VV16 416 aaPredicted RBP11.91□□□□□ -0.5
LINC01040-201ENST00000425048 LYSMD3Q7Z3D4 306 aa11.91□□□□□ -0.5
LINC01040-201ENST00000425048 SENP3-EIF4A1A0A087X0R7 540 aa11.89□□□□□ -0.51
LINC01040-201ENST00000425048 MCCD1P59942 119 aaPredicted RBP11.89□□□□□ -0.51
LINC01040-201ENST00000425048 RNF20Q5VTR2 975 aa11.89□□□□□ -0.51
LINC01040-201ENST00000425048 RNF144AP50876 292 aaPredicted RBP11.88□□□□□ -0.51
LINC01040-201ENST00000425048 RNFT1Q5M7Z0 435 aa11.88□□□□□ -0.51
LINC01040-201ENST00000425048 BANK1Q8NDB2 785 aa11.88□□□□□ -0.51
LINC01040-201ENST00000425048 ATP5J2-PTCD1G3V325 749 aa11.87□□□□□ -0.51
LINC01040-201ENST00000425048 KCNMA1Q12791 1236 aa11.87□□□□□ -0.51
LINC01040-201ENST00000425048 PRICKLE2Q7Z3G6 844 aa11.86□□□□□ -0.51
LINC01040-201ENST00000425048 ZNF592Q92610 1267 aa11.86□□□□□ -0.51
LINC01040-201ENST00000425048 ADAMTS8Q9UP79 889 aa11.86□□□□□ -0.51
LINC01040-201ENST00000425048 NR1H3Q13133 447 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms