RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 COL18A1P39060 1754 aa8.84□□□□□ -1
USP54-202ENST00000413442 FYB1O15117 783 aa8.83□□□□□ -1
USP54-202ENST00000413442 PLEKHG5O94827 1062 aa8.83□□□□□ -1
USP54-202ENST00000413442 PDE3BQ13370 1112 aa8.83□□□□□ -1
USP54-202ENST00000413442 STRN4Q9NRL3 753 aa8.83□□□□□ -1
USP54-202ENST00000413442 CCDC7Q96M83 1385 aa8.83□□□□□ -1
USP54-202ENST00000413442 BLMP54132 1417 aaPredicted RBP8.82□□□□□ -1
USP54-202ENST00000413442 HMGB2P26583 209 aaKnown RBP8.82□□□□□ -1
USP54-202ENST00000413442 FAM98CQ17RN3 349 aaKnown RBP8.82□□□□□ -1
USP54-202ENST00000413442 TOM1L2Q6ZVM7 507 aa8.82□□□□□ -1
USP54-202ENST00000413442 IP6K1Q92551 441 aa8.82□□□□□ -1
USP54-202ENST00000413442 COL5A2P05997 1499 aaPredicted RBP8.82□□□□□ -1
USP54-202ENST00000413442 BRWD3Q6RI45 1802 aa8.82□□□□□ -1
USP54-202ENST00000413442 CGNL1Q0VF96 1302 aa8.81□□□□□ -1
USP54-202ENST00000413442 A0A0G2JS52 829 aa8.81□□□□□ -1
USP54-202ENST00000413442 HSPA5P11021 654 aaKnown RBP8.81□□□□□ -1
USP54-202ENST00000413442 MYT1Q01538 1121 aa8.81□□□□□ -1
USP54-202ENST00000413442 LARP1Q6PKG0 1096 aaKnown RBP8.81□□□□□ -1
USP54-202ENST00000413442 NME9Q86XW9 330 aa8.81□□□□□ -1
USP54-202ENST00000413442 OVOS2A0A0J9YW53 1432 aa8.8□□□□□ -1
USP54-202ENST00000413442 OVOS2Q6IE36 1432 aa8.8□□□□□ -1
USP54-202ENST00000413442 NFAT5O94916 1531 aa8.8□□□□□ -1
USP54-202ENST00000413442 EXOC5O00471 708 aa8.8□□□□□ -1
USP54-202ENST00000413442 CSB-PGBD3P0DP91 1061 aa8.8□□□□□ -1
USP54-202ENST00000413442 AXIN2Q9Y2T1 843 aa8.8□□□□□ -1
USP54-202ENST00000413442 THSD7AQ9UPZ6 1657 aa8.8□□□□□ -1
USP54-202ENST00000413442 LTN1O94822 1766 aa8.79□□□□□ -1
USP54-202ENST00000413442 FAM208AQ9UK61 1670 aaKnown RBP8.79□□□□□ -1
USP54-202ENST00000413442 RTL1A6NKG5 1358 aa8.79□□□□□ -1
USP54-202ENST00000413442 NSD2O96028 1365 aa8.79□□□□□ -1
USP54-202ENST00000413442 BAG6P46379 1132 aa8.79□□□□□ -1
USP54-202ENST00000413442 AMPHP49418 695 aa8.79□□□□□ -1
USP54-202ENST00000413442 DDB1Q16531 1140 aa8.79□□□□□ -1
USP54-202ENST00000413442 PARP4Q9UKK3 1724 aaKnown RBP8.79□□□□□ -1
USP54-202ENST00000413442 BCL9O00512 1426 aa8.79□□□□□ -1
USP54-202ENST00000413442 ERBB3P21860 1342 aa8.79□□□□□ -1
USP54-202ENST00000413442 RGPD5Q99666 1765 aa8.78□□□□□ -1
USP54-202ENST00000413442 PARD3Q8TEW0 1356 aa8.78□□□□□ -1
USP54-202ENST00000413442 CARD14Q9BXL6 1004 aa8.78□□□□□ -1
USP54-202ENST00000413442 USP35Q9P2H5 1018 aa8.78□□□□□ -1
USP54-202ENST00000413442 PLEKHG2Q9H7P9 1386 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 ZBTB7CA1YPR0 619 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 IL2RBP14784 551 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 ANKRD24Q8TF21 1146 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 ZRANB1Q9UGI0 708 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 KNSTRNQ9Y448 316 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 KIF20BQ96Q89 1820 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 RGPD1P0DJD0 1748 aa8.77□□□□□ -1.01
USP54-202ENST00000413442 INSRP06213 1382 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 PLSCR1O15162 318 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 HOXC9P31274 260 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 PANK3Q9H999 370 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 NLRP2Q9NX02 1062 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 DISP2A7MBM2 1401 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 SMG6Q86US8 1419 aaKnown RBP8.76□□□□□ -1.01
USP54-202ENST00000413442 MAP3K19Q56UN5 1328 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 WASHC2AQ641Q2 1341 aa8.76□□□□□ -1.01
USP54-202ENST00000413442 MAP2P11137 1827 aaKnown RBP8.75□□□□□ -1.01
USP54-202ENST00000413442 MYOM1P52179 1685 aa8.75□□□□□ -1.01
USP54-202ENST00000413442 OVOS2A0A0G2JMS6 1433 aa8.75□□□□□ -1.01
USP54-202ENST00000413442 SOX12O15370 315 aa8.75□□□□□ -1.01
USP54-202ENST00000413442 GGNBP2Q9H3C7 697 aa8.75□□□□□ -1.01
USP54-202ENST00000413442 FLT4P35916 1363 aa8.74□□□□□ -1.01
USP54-202ENST00000413442 NSD3Q9BZ95 1437 aa8.74□□□□□ -1.01
USP54-202ENST00000413442 BCL11BQ9C0K0 894 aaPredicted RBP8.74□□□□□ -1.01
USP54-202ENST00000413442 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP54-202ENST00000413442 ANKRD26Q9UPS8 1709 aa8.74□□□□□ -1.01
USP54-202ENST00000413442 NPC1L1Q9UHC9 1359 aa8.73□□□□□ -1.01
USP54-202ENST00000413442 WNK3Q9BYP7 1800 aa8.73□□□□□ -1.01
USP54-202ENST00000413442 APBA3O96018 575 aa8.72□□□□□ -1.01
USP54-202ENST00000413442 ZEB1P37275 1124 aaPredicted RBP8.72□□□□□ -1.01
USP54-202ENST00000413442 NBPF14Q5TI25 921 aa8.72□□□□□ -1.01
USP54-202ENST00000413442 RAPGEF4Q8WZA2 1011 aa8.72□□□□□ -1.01
USP54-202ENST00000413442 POLR3GLQ9BT43 218 aa8.72□□□□□ -1.01
USP54-202ENST00000413442 RGPD3A6NKT7 1758 aaPredicted RBP8.71□□□□□ -1.01
USP54-202ENST00000413442 RGPD4Q7Z3J3 1758 aa8.71□□□□□ -1.01
USP54-202ENST00000413442 SBF2Q86WG5 1849 aa8.71□□□□□ -1.01
USP54-202ENST00000413442 PER1O15534 1290 aaPredicted RBP8.71□□□□□ -1.02
USP54-202ENST00000413442 TRIM37O94972 964 aa8.71□□□□□ -1.02
USP54-202ENST00000413442 TATP17735 454 aaPredicted RBP8.71□□□□□ -1.02
USP54-202ENST00000413442 MORC1Q86VD1 984 aa8.71□□□□□ -1.02
USP54-202ENST00000413442 ZCRB1Q8TBF4 217 aaKnown RBP8.71□□□□□ -1.02
USP54-202ENST00000413442 POLKQ9UBT6 870 aa8.71□□□□□ -1.02
USP54-202ENST00000413442 KIF7Q2M1P5 1343 aa8.71□□□□□ -1.02
USP54-202ENST00000413442 RRS1Q15050 365 aaKnown RBP8.7□□□□□ -1.02
USP54-202ENST00000413442 HSP90AB2PQ58FF8 381 aa8.7□□□□□ -1.02
USP54-202ENST00000413442 MARCH10Q8NA82 808 aaPredicted RBP8.7□□□□□ -1.02
USP54-202ENST00000413442 CAMKK2Q96RR4 588 aa8.7□□□□□ -1.02
USP54-202ENST00000413442 PEAK1Q9H792 1746 aa8.7□□□□□ -1.02
USP54-202ENST00000413442 TNS2Q63HR2 1409 aa8.7□□□□□ -1.02
USP54-202ENST00000413442 KAT6BQ8WYB5 2073 aa8.69□□□□□ -1.02
USP54-202ENST00000413442 NBPF6Q5VWK0 638 aa8.69□□□□□ -1.02
USP54-202ENST00000413442 NBPF4Q96M43 638 aa8.69□□□□□ -1.02
USP54-202ENST00000413442 SPG7Q9UQ90 795 aa8.69□□□□□ -1.02
USP54-202ENST00000413442 LRRC37A3O60309 1634 aa8.69□□□□□ -1.02
USP54-202ENST00000413442 AMOTQ4VCS5 1084 aa8.68□□□□□ -1.02
USP54-202ENST00000413442 AMER1Q5JTC6 1135 aaPredicted RBP8.68□□□□□ -1.02
USP54-202ENST00000413442 DEFB132Q7Z7B7 95 aa8.68□□□□□ -1.02
USP54-202ENST00000413442 LTV1Q96GA3 475 aaPredicted RBP8.68□□□□□ -1.02
USP54-202ENST00000413442 TNS1Q9HBL0 1735 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 278.6 ms