RNA–Protein interactions for RNA: ENST00000392590.3

CDCA4-202, Transcript of cell division cycle associated 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA4, Length 1,536 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4-202ENST00000392590 WASHC2AQ641Q2 1341 aa28.53■■■□□ 2.16
CDCA4-202ENST00000392590 LMO7Q8WWI1 1683 aa28.52■■■□□ 2.16
CDCA4-202ENST00000392590 GLI3P10071 1580 aa28.51■■■□□ 2.16
CDCA4-202ENST00000392590 ONECUT3O60422 494 aaPredicted RBP28.51■■■□□ 2.15
CDCA4-202ENST00000392590 SPATA31A1Q5TZJ5 1347 aa28.5■■■□□ 2.15
CDCA4-202ENST00000392590 FBLN1P23142 703 aa28.5■■■□□ 2.15
CDCA4-202ENST00000392590 COL5A2P05997 1499 aaPredicted RBP28.5■■■□□ 2.15
CDCA4-202ENST00000392590 FAM98CQ17RN3 349 aaKnown RBP28.49■■■□□ 2.15
CDCA4-202ENST00000392590 USP35Q9P2H5 1018 aa28.49■■■□□ 2.15
CDCA4-202ENST00000392590 SEPT12Q8IYM1 358 aa28.48■■■□□ 2.15
CDCA4-202ENST00000392590 KNSTRNQ9Y448 316 aa28.48■■■□□ 2.15
CDCA4-202ENST00000392590 CSB-PGBD3P0DP91 1061 aa28.47■■■□□ 2.15
CDCA4-202ENST00000392590 MAP3K19Q56UN5 1328 aa28.46■■■□□ 2.15
CDCA4-202ENST00000392590 A0A0G2JS52 829 aa28.46■■■□□ 2.15
CDCA4-202ENST00000392590 MYT1Q01538 1121 aa28.46■■■□□ 2.15
CDCA4-202ENST00000392590 TOM1L2Q6ZVM7 507 aa28.46■■■□□ 2.15
CDCA4-202ENST00000392590 AMPHP49418 695 aa28.45■■■□□ 2.15
CDCA4-202ENST00000392590 IP6K1Q92551 441 aa28.45■■■□□ 2.15
CDCA4-202ENST00000392590 COL18A1P39060 1754 aa28.45■■■□□ 2.14
CDCA4-202ENST00000392590 WDR17Q8IZU2 1322 aa28.45■■■□□ 2.14
CDCA4-202ENST00000392590 RRS1Q15050 365 aaKnown RBP28.44■■■□□ 2.14
CDCA4-202ENST00000392590 TCP11L2Q8N4U5 519 aa28.43■■■□□ 2.14
CDCA4-202ENST00000392590 CRB1P82279 1406 aa28.43■■■□□ 2.14
CDCA4-202ENST00000392590 ABCC6O95255 1503 aa28.42■■■□□ 2.14
CDCA4-202ENST00000392590 THRAP3Q9Y2W1 955 aaKnown RBP28.42■■■□□ 2.14
CDCA4-202ENST00000392590 KIF20BQ96Q89 1820 aa28.42■■■□□ 2.14
CDCA4-202ENST00000392590 BARGINQ6ZT62 677 aa28.41■■■□□ 2.14
CDCA4-202ENST00000392590 HOXC9P31274 260 aa28.39■■■□□ 2.14
CDCA4-202ENST00000392590 ANKRD24Q8TF21 1146 aa28.39■■■□□ 2.14
CDCA4-202ENST00000392590 ERBB3P21860 1342 aa28.38■■■□□ 2.13
CDCA4-202ENST00000392590 NSD2O96028 1365 aa28.38■■■□□ 2.13
CDCA4-202ENST00000392590 BLMP54132 1417 aaPredicted RBP28.38■■■□□ 2.13
CDCA4-202ENST00000392590 PER1O15534 1290 aaPredicted RBP28.38■■■□□ 2.13
CDCA4-202ENST00000392590 CARD10Q9BWT7 1032 aa28.38■■■□□ 2.13
CDCA4-202ENST00000392590 TNNT2P45379 298 aaPredicted RBP28.36■■■□□ 2.13
CDCA4-202ENST00000392590 AMER1Q5JTC6 1135 aaPredicted RBP28.36■■■□□ 2.13
CDCA4-202ENST00000392590 LTV1Q96GA3 475 aaPredicted RBP28.36■■■□□ 2.13
CDCA4-202ENST00000392590 LTN1O94822 1766 aa28.36■■■□□ 2.13
CDCA4-202ENST00000392590 KRT27Q7Z3Y8 459 aa28.35■■■□□ 2.13
CDCA4-202ENST00000392590 MORC1Q86VD1 984 aa28.35■■■□□ 2.13
CDCA4-202ENST00000392590 NLRP2Q9NX02 1062 aa28.35■■■□□ 2.13
CDCA4-202ENST00000392590 RTL1A6NKG5 1358 aa28.34■■■□□ 2.13
CDCA4-202ENST00000392590 EMILIN1Q9Y6C2 1016 aa28.33■■■□□ 2.13
CDCA4-202ENST00000392590 PPM1GO15355 546 aaPredicted RBP28.33■■■□□ 2.13
CDCA4-202ENST00000392590 RGPD5Q99666 1765 aa28.32■■■□□ 2.12
CDCA4-202ENST00000392590 KIF24Q5T7B8 1368 aa28.31■■■□□ 2.12
CDCA4-202ENST00000392590 HSP90AB2PQ58FF8 381 aa28.31■■■□□ 2.12
CDCA4-202ENST00000392590 POLKQ9UBT6 870 aa28.31■■■□□ 2.12
CDCA4-202ENST00000392590 UPF1Q92900 1129 aaKnown RBP eCLIP28.3■■■□□ 2.129e-8■■■□□ 14.7
CDCA4-202ENST00000392590 FLT4P35916 1363 aa28.3■■■□□ 2.12
CDCA4-202ENST00000392590 PDE3BQ13370 1112 aa28.28■■■□□ 2.12
CDCA4-202ENST00000392590 CC2D1BQ5T0F9 858 aaKnown RBP28.28■■■□□ 2.12
CDCA4-202ENST00000392590 CDCA7Q9BWT1 371 aaPredicted RBP28.28■■■□□ 2.12
CDCA4-202ENST00000392590 INSRP06213 1382 aa28.27■■■□□ 2.12
CDCA4-202ENST00000392590 THSD7AQ9UPZ6 1657 aa28.27■■■□□ 2.12
CDCA4-202ENST00000392590 ANKRD26Q9UPS8 1709 aa28.23■■■□□ 2.11
CDCA4-202ENST00000392590 CNGB1Q14028 1251 aaPredicted RBP28.23■■■□□ 2.11
CDCA4-202ENST00000392590 DDB1Q16531 1140 aa28.23■■■□□ 2.11
CDCA4-202ENST00000392590 SMG6Q86US8 1419 aaKnown RBP28.23■■■□□ 2.11
CDCA4-202ENST00000392590 FAM182BQ5T319 152 aa28.23■■■□□ 2.11
CDCA4-202ENST00000392590 BRWD3Q6RI45 1802 aa28.22■■■□□ 2.11
CDCA4-202ENST00000392590 NPC1L1Q9UHC9 1359 aa28.22■■■□□ 2.11
CDCA4-202ENST00000392590 IL2RBP14784 551 aa28.21■■■□□ 2.11
CDCA4-202ENST00000392590 PEAK1Q9H792 1746 aa28.2■■■□□ 2.11
CDCA4-202ENST00000392590 NBPF6Q5VWK0 638 aa28.2■■■□□ 2.1
CDCA4-202ENST00000392590 NBPF4Q96M43 638 aa28.2■■■□□ 2.1
CDCA4-202ENST00000392590 EXOC5O00471 708 aa28.19■■■□□ 2.1
CDCA4-202ENST00000392590 DISP2A7MBM2 1401 aa28.19■■■□□ 2.1
CDCA4-202ENST00000392590 FAM196AQ6ZSG2 479 aa28.17■■■□□ 2.1
CDCA4-202ENST00000392590 CCDC125Q86Z20 511 aa28.17■■■□□ 2.1
CDCA4-202ENST00000392590 USHBP1Q8N6Y0 703 aa28.15■■■□□ 2.1
CDCA4-202ENST00000392590 MAP2P11137 1827 aaKnown RBP28.14■■■□□ 2.1
CDCA4-202ENST00000392590 PARP4Q9UKK3 1724 aaKnown RBP28.14■■■□□ 2.09
CDCA4-202ENST00000392590 EIF4A2Q14240 407 aaKnown RBP28.13■■■□□ 2.09
CDCA4-202ENST00000392590 FAM208AQ9UK61 1670 aaKnown RBP28.12■■■□□ 2.09
CDCA4-202ENST00000392590 MTHFSP49914 203 aa28.12■■■□□ 2.09
CDCA4-202ENST00000392590 DDX10Q13206 875 aaKnown RBP28.12■■■□□ 2.09
CDCA4-202ENST00000392590 MARCH10Q8NA82 808 aaPredicted RBP28.11■■■□□ 2.09
CDCA4-202ENST00000392590 SF3B2Q13435 895 aaKnown RBP28.1■■■□□ 2.09
CDCA4-202ENST00000392590 EYA1Q99502 592 aa28.1■■■□□ 2.09
CDCA4-202ENST00000392590 RAPGEF4Q8WZA2 1011 aa28.09■■■□□ 2.09
CDCA4-202ENST00000392590 LRRC37A3O60309 1634 aa28.08■■■□□ 2.09
CDCA4-202ENST00000392590 TNS2Q63HR2 1409 aa28.07■■■□□ 2.08
CDCA4-202ENST00000392590 WNK3Q9BYP7 1800 aa28.06■■■□□ 2.08
CDCA4-202ENST00000392590 OVOS2A0A0G2JMS6 1433 aa28.06■■■□□ 2.08
CDCA4-202ENST00000392590 TRIM37O94972 964 aa28.06■■■□□ 2.08
CDCA4-202ENST00000392590 TATP17735 454 aaPredicted RBP28.06■■■□□ 2.08
CDCA4-202ENST00000392590 EP400Q96L91 3159 aa28.05■■■□□ 2.08
CDCA4-202ENST00000392590 ZCRB1Q8TBF4 217 aaKnown RBP28.04■■■□□ 2.08
CDCA4-202ENST00000392590 RGPD2P0DJD1 1756 aa28.03■■■□□ 2.08
CDCA4-202ENST00000392590 DDX54Q8TDD1 881 aaKnown RBP28.03■■■□□ 2.08
CDCA4-202ENST00000392590 MEGF6O75095 1541 aa28.03■■■□□ 2.08
CDCA4-202ENST00000392590 IL13P35225 146 aa28.01■■■□□ 2.07
CDCA4-202ENST00000392590 NCAPD2Q15021 1401 aa28■■■□□ 2.07
CDCA4-202ENST00000392590 IGSF1Q8N6C5 1336 aa28■■■□□ 2.07
CDCA4-202ENST00000392590 DEFB132Q7Z7B7 95 aa27.99■■■□□ 2.07
CDCA4-202ENST00000392590 ZNF316A6NFI3 1004 aaPredicted RBP27.98■■■□□ 2.07
CDCA4-202ENST00000392590 PPP2R1AP30153 589 aa27.98■■■□□ 2.07
CDCA4-202ENST00000392590 BCL9O00512 1426 aa27.98■■■□□ 2.07
CDCA4-202ENST00000392590 BAG6P46379 1132 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms