RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NESP48681 1621 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 SHTN1A0MZ66 631 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 C6orf163Q5TEZ5 329 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 VPS36Q86VN1 386 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 CNTROBQ8N137 903 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 TRAK1Q9UPV9 953 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 MCM2P49736 904 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 AIMP1Q12904 312 aaKnown RBP12.5□□□□□ -0.41
RTN3-206ENST00000377819 UBE4AQ14139 1066 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 TNIP1Q15025 636 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 UBTFL1P0CB47 393 aaPredicted RBP12.5□□□□□ -0.41
RTN3-206ENST00000377819 NLRP2Q9NX02 1062 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 RBM5P52756 815 aaKnown RBP eCLIP12.5□□□□□ -0.41
RTN3-206ENST00000377819 ARHGAP29Q52LW3 1261 aa12.5□□□□□ -0.41
RTN3-206ENST00000377819 POLA1P09884 1462 aaPredicted RBP12.5□□□□□ -0.41
RTN3-206ENST00000377819 NINLQ9Y2I6 1382 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 SPECC1Q5M775 1068 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 LARP1Q6PKG0 1096 aaKnown RBP12.49□□□□□ -0.41
RTN3-206ENST00000377819 FHAD1B1AJZ9 1412 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 CUX2O14529 1486 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 TSNARE1Q96NA8 513 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.49□□□□□ -0.41
RTN3-206ENST00000377819 FAM177BA6PVY3 158 aa12.49□□□□□ -0.41
RTN3-206ENST00000377819 GCOM1H8Y6P7 765 aaPredicted RBP12.48□□□□□ -0.41
RTN3-206ENST00000377819 MYZAPP0CAP1 466 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 CTNNA2P26232 953 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 TMCO3Q6UWJ1 677 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 KIAA1328Q86T90 577 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 FAM177A1Q8N128 213 aaPredicted RBP12.48□□□□□ -0.41
RTN3-206ENST00000377819 ZNF710Q8N1W2 664 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 RGS22Q8NE09 1264 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 MACROD2A1Z1Q3 448 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 TSPYL4Q9UJ04 414 aa12.48□□□□□ -0.41
RTN3-206ENST00000377819 NUP155O75694 1391 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 FSD2A1L4K1 749 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 NOP2P46087 812 aaKnown RBP12.47□□□□□ -0.41
RTN3-206ENST00000377819 IFFO1Q0D2I5 559 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 CCDC158Q5M9N0 1113 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 FBF1Q8TES7 1133 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 FGD5Q6ZNL6 1462 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 ACTN2P35609 894 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 CHMP4BP1P59074 171 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 RSPH4AQ5TD94 716 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 ZNF397Q8NF99 534 aaPredicted RBP12.47□□□□□ -0.41
RTN3-206ENST00000377819 DIAPH1O60610 1272 aaKnown RBP12.47□□□□□ -0.41
RTN3-206ENST00000377819 ME1P48163 572 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 NUTM2DQ5VT03 806 aaPredicted RBP12.47□□□□□ -0.41
RTN3-206ENST00000377819 DAAM2Q86T65 1068 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 UBXN4Q92575 508 aa12.47□□□□□ -0.41
RTN3-206ENST00000377819 VGFO15240 615 aaPredicted RBP12.46□□□□□ -0.41
RTN3-206ENST00000377819 CCDC192P0DO97 292 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 TIGD1Q96MW7 591 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 TAOK3Q9H2K8 898 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 HMGB1P1B2RPK0 211 aaPredicted RBP12.46□□□□□ -0.41
RTN3-206ENST00000377819 GNAI3P08754 354 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 ATF3P18847 181 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 GNAI1P63096 354 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 LUZP1Q86V48 1076 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 CCDC148Q8NFR7 591 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 CNNM1Q9NRU3 951 aa12.46□□□□□ -0.41
RTN3-206ENST00000377819 TICAM2Q86XR7 235 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 CCDC150Q8NCX0 1101 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 DYNC1I1O14576 645 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 NFKBIBQ15653 356 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
RTN3-206ENST00000377819 CTNNBL1Q8WYA6 563 aaPredicted RBP12.45□□□□□ -0.42
RTN3-206ENST00000377819 TNIKQ9UKE5 1360 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 FIBPO43427 364 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 LRRC45Q96CN5 670 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 LNPKQ9C0E8 428 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 TSPY26PQ9H489 355 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 CFAP43Q8NDM7 1665 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 SURF6O75683 361 aaKnown RBP12.45□□□□□ -0.42
RTN3-206ENST00000377819 MAP9Q49MG5 647 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 EVC2Q86UK5 1308 aa12.45□□□□□ -0.42
RTN3-206ENST00000377819 CDC45O75419 566 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 SPA17Q15506 151 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 KIF6Q6ZMV9 814 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 PIBF1Q8WXW3 757 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 DNAJC2Q99543 621 aaKnown RBP12.44□□□□□ -0.42
RTN3-206ENST00000377819 C22orf23Q9BZE7 217 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 CCDC69A6NI79 296 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 NDC80O14777 642 aa12.44□□□□□ -0.42
RTN3-206ENST00000377819 CEBPZQ03701 1054 aaKnown RBP12.44□□□□□ -0.42
RTN3-206ENST00000377819 PAXIP1Q6ZW49 1069 aaPredicted RBP12.44□□□□□ -0.42
RTN3-206ENST00000377819 SREK1Q8WXA9 508 aaKnown RBP12.44□□□□□ -0.42
RTN3-206ENST00000377819 CDKL5O76039 1030 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 PAFAH1B1P43034 410 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 NEK4P51957 841 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 RIPK4P57078 832 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 MICALCLQ6ZW33 695 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 PDCL2Q8N4E4 241 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 ARL1P40616 181 aaPredicted RBP12.43□□□□□ -0.42
RTN3-206ENST00000377819 WDR78Q5VTH9 848 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 SPECC1LQ69YQ0 1117 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 LRSAM1Q6UWE0 723 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 PPP1R9BQ96SB3 815 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 MYCNP04198 464 aaPredicted RBP12.43□□□□□ -0.42
RTN3-206ENST00000377819 CETN1Q12798 172 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 ANKRD1Q15327 319 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms