RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 DSG2Q14126 1118 aa12.29□□□□□ -0.44
ATG4A-202ENST00000345734 WDR43Q15061 677 aaKnown RBP eCLIP12.29□□□□□ -0.44
ATG4A-202ENST00000345734 GPHNQ9NQX3 736 aaPredicted RBP12.29□□□□□ -0.44
ATG4A-202ENST00000345734 EMILIN3Q9NT22 766 aa12.29□□□□□ -0.44
ATG4A-202ENST00000345734 SLIT1O75093 1534 aa12.29□□□□□ -0.44
ATG4A-202ENST00000345734 ARHGAP23Q9P227 1491 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 TECPR2O15040 1411 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 ZMYND10O75800 440 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 SLC26A8Q96RN1 970 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 CABP1Q9NZU7 370 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 EID1Q9Y6B2 187 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 CPS1P31327 1500 aa12.28□□□□□ -0.44
ATG4A-202ENST00000345734 EVX2Q03828 476 aa12.27□□□□□ -0.45
ATG4A-202ENST00000345734 SMYD5Q6GMV2 418 aa12.27□□□□□ -0.45
ATG4A-202ENST00000345734 ILDR1Q86SU0 546 aaPredicted RBP12.27□□□□□ -0.45
ATG4A-202ENST00000345734 FAM135BQ49AJ0 1406 aa12.27□□□□□ -0.45
ATG4A-202ENST00000345734 TERF2IPQ9NYB0 399 aa12.26□□□□□ -0.45
ATG4A-202ENST00000345734 ROBO2Q9HCK4 1378 aa12.26□□□□□ -0.45
ATG4A-202ENST00000345734 MED14O60244 1454 aa12.26□□□□□ -0.45
ATG4A-202ENST00000345734 WASLO00401 505 aaPredicted RBP12.26□□□□□ -0.45
ATG4A-202ENST00000345734 THEMISQ8N1K5 641 aaPredicted RBP12.26□□□□□ -0.45
ATG4A-202ENST00000345734 SIRT1Q96EB6 747 aa12.26□□□□□ -0.45
ATG4A-202ENST00000345734 MICALL2Q8IY33 904 aa12.25□□□□□ -0.45
ATG4A-202ENST00000345734 POLR3AO14802 1390 aaPredicted RBP12.25□□□□□ -0.45
ATG4A-202ENST00000345734 NSD2O96028 1365 aa12.25□□□□□ -0.45
ATG4A-202ENST00000345734 PTPRUQ92729 1446 aa12.25□□□□□ -0.45
ATG4A-202ENST00000345734 ADAMTSL3P82987 1691 aa12.25□□□□□ -0.45
ATG4A-202ENST00000345734 GGNBP2Q9H3C7 697 aa12.25□□□□□ -0.45
ATG4A-202ENST00000345734 ARIH1Q9Y4X5 557 aaPredicted RBP12.25□□□□□ -0.45
ATG4A-202ENST00000345734 HDGFL2Q7Z4V5 671 aaPredicted RBP12.24□□□□□ -0.45
ATG4A-202ENST00000345734 CCDC146Q8IYE0 955 aa12.24□□□□□ -0.45
ATG4A-202ENST00000345734 CDCA7LQ96GN5 454 aa12.24□□□□□ -0.45
ATG4A-202ENST00000345734 CEP170BQ9Y4F5 1589 aaPredicted RBP12.24□□□□□ -0.45
ATG4A-202ENST00000345734 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.24□□□□□ -0.45
ATG4A-202ENST00000345734 SHPRHQ149N8 1683 aa12.24□□□□□ -0.45
ATG4A-202ENST00000345734 HAX1O00165 279 aa12.23□□□□□ -0.45
ATG4A-202ENST00000345734 PDCD7Q8N8D1 485 aaKnown RBP12.23□□□□□ -0.45
ATG4A-202ENST00000345734 ANKRD26Q9UPS8 1709 aa12.23□□□□□ -0.45
ATG4A-202ENST00000345734 FYB1O15117 783 aa12.23□□□□□ -0.45
ATG4A-202ENST00000345734 MTHFSP49914 203 aa12.23□□□□□ -0.45
ATG4A-202ENST00000345734 ATN1P54259 1190 aaPredicted RBP12.23□□□□□ -0.45
ATG4A-202ENST00000345734 KIF20BQ96Q89 1820 aa12.23□□□□□ -0.45
ATG4A-202ENST00000345734 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
ATG4A-202ENST00000345734 PDE3BQ13370 1112 aa12.22□□□□□ -0.45
ATG4A-202ENST00000345734 GPIHBP1Q8IV16 184 aa12.22□□□□□ -0.45
ATG4A-202ENST00000345734 NUDT16Q96DE0 195 aaKnown RBP12.22□□□□□ -0.45
ATG4A-202ENST00000345734 ATP7BP35670 1465 aa12.21□□□□□ -0.45
ATG4A-202ENST00000345734 TBX22Q9Y458 520 aa12.21□□□□□ -0.45
ATG4A-202ENST00000345734 AMOTL2Q9Y2J4 779 aa12.2□□□□□ -0.46
ATG4A-202ENST00000345734 SETD1BQ9UPS6 1966 aaKnown RBP12.2□□□□□ -0.46
ATG4A-202ENST00000345734 PRR36Q9H6K5 1346 aa12.2□□□□□ -0.46
ATG4A-202ENST00000345734 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.2□□□□□ -0.46
ATG4A-202ENST00000345734 TMC2Q8TDI7 906 aa12.2□□□□□ -0.46
ATG4A-202ENST00000345734 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
ATG4A-202ENST00000345734 RNF123Q5XPI4 1314 aa12.19□□□□□ -0.46
ATG4A-202ENST00000345734 ADGRB2O60241 1585 aa12.19□□□□□ -0.46
ATG4A-202ENST00000345734 CPSF1Q10570 1443 aaKnown RBP12.19□□□□□ -0.46
ATG4A-202ENST00000345734 APAF1O14727 1248 aa12.19□□□□□ -0.46
ATG4A-202ENST00000345734 DIP2AQ14689 1571 aa12.18□□□□□ -0.46
ATG4A-202ENST00000345734 ZNF142P52746 1687 aaPredicted RBP12.18□□□□□ -0.46
ATG4A-202ENST00000345734 AKAP12Q02952 1782 aa12.18□□□□□ -0.46
ATG4A-202ENST00000345734 CFAP53Q96M91 514 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 CDC42BPGQ6DT37 1551 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 ZNF521Q96K83 1311 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 ITSN1Q15811 1721 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 MON2Q7Z3U7 1717 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 NUTM2FA1L443 756 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 BARGINQ6ZT62 677 aa12.17□□□□□ -0.46
ATG4A-202ENST00000345734 C2orf72A6NCS6 295 aa12.16□□□□□ -0.46
ATG4A-202ENST00000345734 XRN1Q8IZH2 1706 aaKnown RBP12.16□□□□□ -0.46
ATG4A-202ENST00000345734 PTCH1Q13635 1447 aa12.16□□□□□ -0.46
ATG4A-202ENST00000345734 FBLN1P23142 703 aa12.16□□□□□ -0.46
ATG4A-202ENST00000345734 C14orf37Q86TY3 774 aa12.16□□□□□ -0.46
ATG4A-202ENST00000345734 KRI1Q8N9T8 703 aaKnown RBP12.16□□□□□ -0.46
ATG4A-202ENST00000345734 EDC4Q6P2E9 1401 aaKnown RBP12.15□□□□□ -0.46
ATG4A-202ENST00000345734 TOPAZ1Q8N9V7 1692 aa12.15□□□□□ -0.46
ATG4A-202ENST00000345734 NME9Q86XW9 330 aa12.15□□□□□ -0.46
ATG4A-202ENST00000345734 PLPP6Q8IY26 295 aa12.15□□□□□ -0.46
ATG4A-202ENST00000345734 RCAN3Q9UKA8 241 aa12.15□□□□□ -0.46
ATG4A-202ENST00000345734 MAP2P11137 1827 aaKnown RBP12.15□□□□□ -0.46
ATG4A-202ENST00000345734 PDIA6Q15084 440 aa12.14□□□□□ -0.47
ATG4A-202ENST00000345734 ERICH6BQ5W0A0 696 aa12.14□□□□□ -0.47
ATG4A-202ENST00000345734 COL3A1P02461 1466 aaPredicted RBP12.14□□□□□ -0.47
ATG4A-202ENST00000345734 RGPD8O14715 1765 aaPredicted RBP12.14□□□□□ -0.47
ATG4A-202ENST00000345734 KCNA6P17658 529 aa12.14□□□□□ -0.47
ATG4A-202ENST00000345734 FOXK1P85037 733 aa12.14□□□□□ -0.47
ATG4A-202ENST00000345734 ANKLE2Q86XL3 938 aa12.14□□□□□ -0.47
ATG4A-202ENST00000345734 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
ATG4A-202ENST00000345734 UPF1Q92900 1129 aaKnown RBP eCLIP12.13□□□□□ -0.47
ATG4A-202ENST00000345734 BOLA1Q9Y3E2 137 aa12.13□□□□□ -0.47
ATG4A-202ENST00000345734 U2AF1L5P0DN76 240 aaPredicted RBP12.13□□□□□ -0.47
ATG4A-202ENST00000345734 U2AF1Q01081 240 aaKnown RBP eCLIP12.13□□□□□ -0.47
ATG4A-202ENST00000345734 DUSP27Q5VZP5 1158 aa12.13□□□□□ -0.47
ATG4A-202ENST00000345734 RUNDC1Q96C34 613 aa12.13□□□□□ -0.47
ATG4A-202ENST00000345734 NKTRP30414 1462 aaKnown RBP12.13□□□□□ -0.47
ATG4A-202ENST00000345734 GRXCR2A6NFK2 248 aa12.12□□□□□ -0.47
ATG4A-202ENST00000345734 PPP4R2Q9NY27 417 aa12.12□□□□□ -0.47
ATG4A-202ENST00000345734 RRP7AQ9Y3A4 280 aaKnown RBP12.12□□□□□ -0.47
ATG4A-202ENST00000345734 CHD2O14647 1828 aaKnown RBP12.12□□□□□ -0.47
ATG4A-202ENST00000345734 ATMINO43313 823 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms