RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 SOX12O15370 315 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 AXIN2Q9Y2T1 843 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 CCDC9Q9Y3X0 531 aaKnown RBP18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 COL18A1P39060 1754 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 WASHC2AQ641Q2 1341 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 NSD2O96028 1365 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 STRN4Q9NRL3 753 aa18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 THRAP3Q9Y2W1 955 aaKnown RBP18■□□□□ 0.47
HLA-DQA1-201ENST00000343139 BARGINQ6ZT62 677 aa17.99■□□□□ 0.47
HLA-DQA1-201ENST00000343139 WDR17Q8IZU2 1322 aa17.99■□□□□ 0.47
HLA-DQA1-201ENST00000343139 KIF24Q5T7B8 1368 aa17.99■□□□□ 0.47
HLA-DQA1-201ENST00000343139 BLMP54132 1417 aaPredicted RBP17.98■□□□□ 0.47
HLA-DQA1-201ENST00000343139 CRB1P82279 1406 aa17.98■□□□□ 0.47
HLA-DQA1-201ENST00000343139 LARP1Q6PKG0 1096 aaKnown RBP17.98■□□□□ 0.47
HLA-DQA1-201ENST00000343139 ZBTB7CA1YPR0 619 aa17.97■□□□□ 0.47
HLA-DQA1-201ENST00000343139 IP6K1Q92551 441 aa17.97■□□□□ 0.47
HLA-DQA1-201ENST00000343139 RTL1A6NKG5 1358 aa17.97■□□□□ 0.47
HLA-DQA1-201ENST00000343139 KNSTRNQ9Y448 316 aa17.96■□□□□ 0.47
HLA-DQA1-201ENST00000343139 MAP3K19Q56UN5 1328 aa17.96■□□□□ 0.47
HLA-DQA1-201ENST00000343139 ERBB3P21860 1342 aa17.96■□□□□ 0.46
HLA-DQA1-201ENST00000343139 SEPT12Q8IYM1 358 aa17.96■□□□□ 0.46
HLA-DQA1-201ENST00000343139 TCP11L2Q8N4U5 519 aa17.96■□□□□ 0.46
HLA-DQA1-201ENST00000343139 KIF20BQ96Q89 1820 aa17.95■□□□□ 0.46
HLA-DQA1-201ENST00000343139 PER1O15534 1290 aaPredicted RBP17.95■□□□□ 0.46
HLA-DQA1-201ENST00000343139 FAM98CQ17RN3 349 aaKnown RBP17.95■□□□□ 0.46
HLA-DQA1-201ENST00000343139 CARD10Q9BWT7 1032 aa17.94■□□□□ 0.46
HLA-DQA1-201ENST00000343139 TOM1L2Q6ZVM7 507 aa17.93■□□□□ 0.46
HLA-DQA1-201ENST00000343139 HOXC9P31274 260 aa17.92■□□□□ 0.46
HLA-DQA1-201ENST00000343139 AMER1Q5JTC6 1135 aaPredicted RBP17.92■□□□□ 0.46
HLA-DQA1-201ENST00000343139 NPC1L1Q9UHC9 1359 aa17.92■□□□□ 0.46
HLA-DQA1-201ENST00000343139 AMPHP49418 695 aa17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 CDCA7Q9BWT1 371 aaPredicted RBP17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 THSD7AQ9UPZ6 1657 aa17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 CSB-PGBD3P0DP91 1061 aa17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 RRS1Q15050 365 aaKnown RBP17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 ANKRD24Q8TF21 1146 aa17.91■□□□□ 0.46
HLA-DQA1-201ENST00000343139 LTN1O94822 1766 aa17.9■□□□□ 0.46
HLA-DQA1-201ENST00000343139 FLT4P35916 1363 aa17.9■□□□□ 0.46
HLA-DQA1-201ENST00000343139 FBLN1P23142 703 aa17.9■□□□□ 0.46
HLA-DQA1-201ENST00000343139 USP35Q9P2H5 1018 aa17.9■□□□□ 0.46
HLA-DQA1-201ENST00000343139 INSRP06213 1382 aa17.9■□□□□ 0.46
HLA-DQA1-201ENST00000343139 KRT27Q7Z3Y8 459 aa17.89■□□□□ 0.45
HLA-DQA1-201ENST00000343139 ANKRD26Q9UPS8 1709 aa17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 A0A0G2JS52 829 aa17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 MYT1Q01538 1121 aa17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 MORC1Q86VD1 984 aa17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 UPF1Q92900 1129 aaKnown RBP eCLIP17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 POLKQ9UBT6 870 aa17.87■□□□□ 0.45
HLA-DQA1-201ENST00000343139 DISP2A7MBM2 1401 aa17.86■□□□□ 0.45
HLA-DQA1-201ENST00000343139 EMILIN1Q9Y6C2 1016 aa17.86■□□□□ 0.45
HLA-DQA1-201ENST00000343139 SMG6Q86US8 1419 aaKnown RBP17.85■□□□□ 0.45
HLA-DQA1-201ENST00000343139 CCDC125Q86Z20 511 aa17.85■□□□□ 0.45
HLA-DQA1-201ENST00000343139 NLRP2Q9NX02 1062 aa17.85■□□□□ 0.45
HLA-DQA1-201ENST00000343139 RGPD5Q99666 1765 aa17.83■□□□□ 0.45
HLA-DQA1-201ENST00000343139 HSP90AB2PQ58FF8 381 aa17.83■□□□□ 0.45
HLA-DQA1-201ENST00000343139 FAM208AQ9UK61 1670 aaKnown RBP17.83■□□□□ 0.45
HLA-DQA1-201ENST00000343139 PARP4Q9UKK3 1724 aaKnown RBP17.82■□□□□ 0.44
HLA-DQA1-201ENST00000343139 PDE3BQ13370 1112 aa17.82■□□□□ 0.44
HLA-DQA1-201ENST00000343139 PEAK1Q9H792 1746 aa17.81■□□□□ 0.44
HLA-DQA1-201ENST00000343139 IL2RBP14784 551 aa17.81■□□□□ 0.44
HLA-DQA1-201ENST00000343139 DDB1Q16531 1140 aa17.81■□□□□ 0.44
HLA-DQA1-201ENST00000343139 TNNT2P45379 298 aaPredicted RBP17.8■□□□□ 0.44
HLA-DQA1-201ENST00000343139 LTV1Q96GA3 475 aaPredicted RBP17.8■□□□□ 0.44
HLA-DQA1-201ENST00000343139 BRWD3Q6RI45 1802 aa17.8■□□□□ 0.44
HLA-DQA1-201ENST00000343139 EP400Q96L91 3159 aa17.8■□□□□ 0.44
HLA-DQA1-201ENST00000343139 FAM196AQ6ZSG2 479 aa17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 BCL9O00512 1426 aa17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 EXOC5O00471 708 aa17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 PPM1GO15355 546 aaPredicted RBP17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 NBPF6Q5VWK0 638 aa17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 NBPF4Q96M43 638 aa17.79■□□□□ 0.44
HLA-DQA1-201ENST00000343139 NCAPD2Q15021 1401 aa17.78■□□□□ 0.44
HLA-DQA1-201ENST00000343139 TNS2Q63HR2 1409 aa17.77■□□□□ 0.44
HLA-DQA1-201ENST00000343139 CC2D1BQ5T0F9 858 aaKnown RBP17.77■□□□□ 0.44
HLA-DQA1-201ENST00000343139 LRRC37A3O60309 1634 aa17.77■□□□□ 0.43
HLA-DQA1-201ENST00000343139 PLEKHG2Q9H7P9 1386 aa17.76■□□□□ 0.43
HLA-DQA1-201ENST00000343139 WNK3Q9BYP7 1800 aa17.76■□□□□ 0.43
HLA-DQA1-201ENST00000343139 OVOS2A0A0G2JMS6 1433 aa17.75■□□□□ 0.43
HLA-DQA1-201ENST00000343139 MAP2P11137 1827 aaKnown RBP17.75■□□□□ 0.43
HLA-DQA1-201ENST00000343139 EIF4A2Q14240 407 aaKnown RBP17.74■□□□□ 0.43
HLA-DQA1-201ENST00000343139 MARCH10Q8NA82 808 aaPredicted RBP17.73■□□□□ 0.43
HLA-DQA1-201ENST00000343139 MTHFSP49914 203 aa17.72■□□□□ 0.43
HLA-DQA1-201ENST00000343139 FAM182BQ5T319 152 aa17.72■□□□□ 0.43
HLA-DQA1-201ENST00000343139 RAPGEF4Q8WZA2 1011 aa17.72■□□□□ 0.43
HLA-DQA1-201ENST00000343139 EYA1Q99502 592 aa17.72■□□□□ 0.43
HLA-DQA1-201ENST00000343139 IGSF1Q8N6C5 1336 aa17.71■□□□□ 0.43
HLA-DQA1-201ENST00000343139 SF3B2Q13435 895 aaKnown RBP17.71■□□□□ 0.43
HLA-DQA1-201ENST00000343139 MEGF6O75095 1541 aa17.71■□□□□ 0.42
HLA-DQA1-201ENST00000343139 TATP17735 454 aaPredicted RBP17.7■□□□□ 0.42
HLA-DQA1-201ENST00000343139 IL13P35225 146 aa17.69■□□□□ 0.42
HLA-DQA1-201ENST00000343139 USHBP1Q8N6Y0 703 aa17.69■□□□□ 0.42
HLA-DQA1-201ENST00000343139 ZCRB1Q8TBF4 217 aaKnown RBP17.69■□□□□ 0.42
HLA-DQA1-201ENST00000343139 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.69■□□□□ 0.42
HLA-DQA1-201ENST00000343139 DDX10Q13206 875 aaKnown RBP17.67■□□□□ 0.42
HLA-DQA1-201ENST00000343139 PARD3Q8TEW0 1356 aa17.67■□□□□ 0.42
HLA-DQA1-201ENST00000343139 BAG6P46379 1132 aa17.66■□□□□ 0.42
HLA-DQA1-201ENST00000343139 KDRP35968 1356 aa17.66■□□□□ 0.42
HLA-DQA1-201ENST00000343139 TRIM37O94972 964 aa17.66■□□□□ 0.42
HLA-DQA1-201ENST00000343139 BCL11BQ9C0K0 894 aaPredicted RBP17.66■□□□□ 0.42
HLA-DQA1-201ENST00000343139 RGPD1P0DJD0 1748 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms