RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 Rapgef3Q8VCC8 918 aa19.09■□□□□ 0.65
Nup88-202ENSMUST00000108530 Mbd3Q9Z2D8 285 aaKnown RBP19.09■□□□□ 0.65
Nup88-202ENSMUST00000108530 Eya1P97767 591 aa19.08■□□□□ 0.64
Nup88-202ENSMUST00000108530 GnpatP98192 678 aa19.08■□□□□ 0.64
Nup88-202ENSMUST00000108530 Ddx17Q501J6 650 aaKnown RBP19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Ccdc60Q8C4J0 545 aa19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Atp7bQ64446 1462 aa19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Hoxc9P09633 260 aa19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Cdc37l1Q9CZP7 335 aa19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Ppp1r3fQ9JIG4 799 aa19.07■□□□□ 0.64
Nup88-202ENSMUST00000108530 Gm6268A2A3U9 297 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Klhdc4Q921I2 584 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Scn7aB1AYL1 1681 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Wdr17E9Q271 1322 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Trim58Q5NCC9 485 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Unc13bQ9Z1N9 1602 aa19.06■□□□□ 0.64
Nup88-202ENSMUST00000108530 Mdc1Q5PSV9 1707 aa19.05■□□□□ 0.64
Nup88-202ENSMUST00000108530 Brwd3A2AHJ4 1799 aa19.04■□□□□ 0.64
Nup88-202ENSMUST00000108530 U2surpQ6NV83 1029 aaKnown RBP19.04■□□□□ 0.64
Nup88-202ENSMUST00000108530 TmpoQ61033 693 aaKnown RBP19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Amigo3Q8C2S7 508 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Iqcf3Q9D498 203 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 TimelessQ9R1X4 1197 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Ncapd2Q8K2Z4 1392 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Snap23O09044 210 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Farp2Q91VS8 1065 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Znf330Q922H9 316 aa19.03■□□□□ 0.64
Nup88-202ENSMUST00000108530 Larp1bA0A0A6YXJ7 370 aaKnown RBP19.02■□□□□ 0.64
Nup88-202ENSMUST00000108530 NudcO35685 332 aaKnown RBP19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 Nectin2P32507 530 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 Liat1Q810M6 228 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 PtprvP70289 1705 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 TatQ8QZR1 454 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 Fam135bQ9DAI6 1403 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 Kdm2bQ6P1G2 1309 aa19.01■□□□□ 0.63
Nup88-202ENSMUST00000108530 Gnai1B2RSH2 354 aa19■□□□□ 0.63
Nup88-202ENSMUST00000108530 Atf3Q60765 181 aa19■□□□□ 0.63
Nup88-202ENSMUST00000108530 Usp16Q99LG0 825 aa19■□□□□ 0.63
Nup88-202ENSMUST00000108530 Gnai3Q9DC51 354 aa19■□□□□ 0.63
Nup88-202ENSMUST00000108530 Dnajc10Q9DC23 793 aa19■□□□□ 0.63
Nup88-202ENSMUST00000108530 B4galnt3Q6L8S8 986 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 Ano8Q6PB70 1060 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 Tmco5bQ80X59 307 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 Gimap6Q8K349 305 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 Col18a1P39061 1774 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 Ltbp4Q8K4G1 1666 aa18.99■□□□□ 0.63
Nup88-202ENSMUST00000108530 G3bp1P97855 465 aaKnown RBP18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Ncoa4Q5U4H9 625 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Dbr1Q923B1 550 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 1700019A02RikA0A087WPV9 146 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Pibf1E9Q6K3 756 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Vamp4O70480 141 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Kcna6Q61923 529 aa18.98■□□□□ 0.63
Nup88-202ENSMUST00000108530 Nutm1Q8BHP2 1126 aa18.97■□□□□ 0.63
Nup88-202ENSMUST00000108530 Znf521Q6KAS7 1311 aa18.97■□□□□ 0.63
Nup88-202ENSMUST00000108530 Duxf3A0A0N4SV92 674 aa18.97■□□□□ 0.63
Nup88-202ENSMUST00000108530 Ggnbp2Q5SV77 696 aa18.97■□□□□ 0.63
Nup88-202ENSMUST00000108530 Dzip1Q8BMD2 852 aa18.96■□□□□ 0.63
Nup88-202ENSMUST00000108530 Amotl2Q8K371 772 aa18.96■□□□□ 0.63
Nup88-202ENSMUST00000108530 Ccdc171E9Q1U1 1324 aa18.95■□□□□ 0.62
Nup88-202ENSMUST00000108530 Prim1P20664 417 aa18.95■□□□□ 0.62
Nup88-202ENSMUST00000108530 Plekhm2Q80TQ5 1018 aa18.95■□□□□ 0.62
Nup88-202ENSMUST00000108530 Nfat5Q9WV30 1534 aa18.94■□□□□ 0.62
Nup88-202ENSMUST00000108530 Pak3Q61036 559 aa18.94■□□□□ 0.62
Nup88-202ENSMUST00000108530 Dixdc1Q80Y83 711 aa18.93■□□□□ 0.62
Nup88-202ENSMUST00000108530 Armcx1Q9CX83 456 aa18.93■□□□□ 0.62
Nup88-202ENSMUST00000108530 Kcnh5Q920E3 988 aa18.93■□□□□ 0.62
Nup88-202ENSMUST00000108530 Rtf1A2AQ19 715 aaKnown RBP18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Rlbp1Q9Z275 317 aa18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Ttll13A4Q9F6 804 aa18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Maco1Q7TQE6 664 aaKnown RBP18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Bcl11aQ9QYE3 773 aa18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Nsd3Q6P2L6 1439 aa18.92■□□□□ 0.62
Nup88-202ENSMUST00000108530 Fmnl2A2APV2 1086 aa18.91■□□□□ 0.62
Nup88-202ENSMUST00000108530 Zfp777B9EKF4 885 aa18.9■□□□□ 0.62
Nup88-202ENSMUST00000108530 Rad17Q6NXW6 688 aa18.9■□□□□ 0.62
Nup88-202ENSMUST00000108530 KarsQ99MN1 595 aaKnown RBP18.9■□□□□ 0.62
Nup88-202ENSMUST00000108530 Slit2Q9R1B9 1521 aa18.9■□□□□ 0.62
Nup88-202ENSMUST00000108530 HypkQ9CR41 129 aa18.89■□□□□ 0.61
Nup88-202ENSMUST00000108530 Q3UPC7 1272 aa18.89■□□□□ 0.61
Nup88-202ENSMUST00000108530 Robo1O89026 1612 aa18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 DiexfQ8BTT6 772 aaKnown RBP18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 Chmp5Q9D7S9 219 aa18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 Ptpn23Q6PB44 1692 aa18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 Wnk3Q80XP9 1757 aa18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 Smc5Q8CG46 1101 aaKnown RBP18.88■□□□□ 0.61
Nup88-202ENSMUST00000108530 Aplp1Q03157 653 aa18.86■□□□□ 0.61
Nup88-202ENSMUST00000108530 Sos1Q62245 1319 aa18.86■□□□□ 0.61
Nup88-202ENSMUST00000108530 Ahnak2E9PYB0 1738 aaKnown RBP18.85■□□□□ 0.61
Nup88-202ENSMUST00000108530 TnrQ8BYI9 1358 aa18.85■□□□□ 0.61
Nup88-202ENSMUST00000108530 Cluap1Q8R3P7 413 aa18.85■□□□□ 0.61
Nup88-202ENSMUST00000108530 Gm21698A0A087WQP8 267 aa18.84■□□□□ 0.61
Nup88-202ENSMUST00000108530 Gm21671G3UY31 267 aa18.84■□□□□ 0.61
Nup88-202ENSMUST00000108530 Brinp3Q499E0 766 aa18.83■□□□□ 0.61
Nup88-202ENSMUST00000108530 Scaf1Q5U4C3 1256 aaKnown RBP18.83■□□□□ 0.61
Nup88-202ENSMUST00000108530 Aldh1l1Q8R0Y6 902 aa18.83■□□□□ 0.61
Nup88-202ENSMUST00000108530 Irx6Q9ER75 438 aa18.83■□□□□ 0.6
Nup88-202ENSMUST00000108530 Tet3Q8BG87 1668 aa18.83■□□□□ 0.6
Nup88-202ENSMUST00000108530 Siglec1Q62230 1695 aa18.82■□□□□ 0.6
Nup88-202ENSMUST00000108530 Aifm3Q3TY86 605 aa18.82■□□□□ 0.6
Retrieved 100 of 22,080 RNA–protein pairs in 34.6 ms