RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 CastP51125 788 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Cgnl1Q6AW69 1298 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Tex2Q6ZPJ0 1128 aaKnown RBP13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Map3k19E9Q3S4 1311 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Terf2O35144 541 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Eif4a2P10630 407 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Kif18aQ91WD7 886 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Usp54Q8BL06 1588 aaKnown RBP13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Lrrc7Q80TE7 1490 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Gm21663A0A0G2JE01 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Gm7361D3Z6R1 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 5031410I06RikE9Q4E0 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Gm1979E9QAN3 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Gm5862K7N5V5 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Gm10220K7N660 267 aa13.23□□□□□ -0.29
Msh3-201ENSMUST00000022220 Iffo2Q8R2V2 512 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 CgnP59242 1191 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Btbd11Q6GQW0 1109 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Tceal9Q9DD24 104 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Hfm1D3Z4R1 1434 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Idi1P58044 227 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Frmpd2A0A140LI67 1392 aa13.22□□□□□ -0.29
Msh3-201ENSMUST00000022220 Pcmtd1P59913 357 aa13.21□□□□□ -0.29
Msh3-201ENSMUST00000022220 TkfcQ8VC30 578 aa13.21□□□□□ -0.29
Msh3-201ENSMUST00000022220 Casq1O09165 405 aa13.21□□□□□ -0.3
Msh3-201ENSMUST00000022220 Tbc1d32Q3URV1 1296 aa13.21□□□□□ -0.3
Msh3-201ENSMUST00000022220 Rnf214Q8BFU3 668 aaKnown RBP13.21□□□□□ -0.3
Msh3-201ENSMUST00000022220 Cdc42bpaQ3UU96 1719 aa13.21□□□□□ -0.3
Msh3-201ENSMUST00000022220 PalldQ9ET54 1408 aa13.21□□□□□ -0.3
Msh3-201ENSMUST00000022220 Duxf3A0A0N4SV92 674 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Srgap3Q812A2 1099 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Rsph6aQ8CDR2 708 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Fam13bQ8K2H3 851 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Dixdc1Q80Y83 711 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Nol12Q8BG17 217 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Vgll3P85442 326 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Gpatch11Q3UFS4 262 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Dnajc5gQ8C632 165 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Kif14L0N7N1 1674 aaKnown RBP13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Ddx17Q501J6 650 aaKnown RBP13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Aldh1l1Q8R0Y6 902 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Farp2Q91VS8 1065 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Dnajc10Q9DC23 793 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Ppp1r3fQ9JIG4 799 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Cyp46a1Q9WVK8 500 aa13.2□□□□□ -0.3
Msh3-201ENSMUST00000022220 Gnai2P08752 355 aaKnown RBP13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 Dzip1Q8BMD2 852 aa13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 BccipQ9CWI3 316 aa13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 Prkar2bP31324 416 aa13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 Chpf2Q3UU43 768 aa13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 CrebrfQ8CDG5 640 aaKnown RBP13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 Rlbp1Q9Z275 317 aa13.19□□□□□ -0.3
Msh3-201ENSMUST00000022220 Smg7Q5RJH6 1138 aaKnown RBP13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Clcn1Q64347 994 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Casc1Q6TDU8 730 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Fam43aQ8BUP8 424 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Gtf3c5Q8R2T8 520 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Skint5A7XUY5 1461 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Fam83gQ5SWY7 812 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Fez1Q8K0X8 392 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 MvpQ9EQK5 861 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Nckap5lQ6GQX2 1323 aa13.18□□□□□ -0.3
Msh3-201ENSMUST00000022220 Cep170Q6A065 1588 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Sf3b2Q3UJB0 878 aaKnown RBP13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 PsapQ61207 557 aaKnown RBP13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Talpid3E9PV87 1520 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Cul7Q8VE73 1689 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Q4VA45 678 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Nphp1Q9QY53 687 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Nphp4P59240 1425 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Tfip11Q9ERA6 838 aaKnown RBP13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 TefQ9JLC6 301 aa13.17□□□□□ -0.3
Msh3-201ENSMUST00000022220 Gm16486A0A1D5RMD1 1434 aa13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 Eya1P97767 591 aa13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 CarsQ9ER72 831 aaKnown RBP13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 Gse1Q3U3C9 1213 aa13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 Cetn4Q8K4K1 168 aa13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 Kif1bQ60575 1816 aaKnown RBP13.16□□□□□ -0.3
Msh3-201ENSMUST00000022220 Pnmal2G3X9N3 661 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Kcnh5Q920E3 988 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Sbno1Q689Z5 1390 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Dot1lQ6XZL8 1540 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Antxr1Q9CZ52 562 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Atf7ipQ7TT18 1306 aa13.15□□□□□ -0.3
Msh3-201ENSMUST00000022220 Kdm5cP41230 1554 aa13.15□□□□□ -0.31
Msh3-201ENSMUST00000022220 Nol8Q3UHX0 1147 aaKnown RBP13.14□□□□□ -0.31
Msh3-201ENSMUST00000022220 Kiaa0754Q69ZZ9 979 aa13.14□□□□□ -0.31
Msh3-201ENSMUST00000022220 Dhx16G3X8X0 1044 aaKnown RBP13.14□□□□□ -0.31
Msh3-201ENSMUST00000022220 Smc4Q8CG47 1286 aa13.14□□□□□ -0.31
Msh3-201ENSMUST00000022220 Ppip5k1A2ARP1 1436 aa13.13□□□□□ -0.31
Msh3-201ENSMUST00000022220 Ak9G3UYQ4 1894 aa13.13□□□□□ -0.31
Msh3-201ENSMUST00000022220 Efcab6Q6P1E8 1516 aa13.13□□□□□ -0.31
Msh3-201ENSMUST00000022220 Znf326O88291 580 aa13.13□□□□□ -0.31
Msh3-201ENSMUST00000022220 Irf5P56477 497 aa13.13□□□□□ -0.31
Msh3-201ENSMUST00000022220 Aifm3Q3TY86 605 aa13.12□□□□□ -0.31
Msh3-201ENSMUST00000022220 Vamp4O70480 141 aa13.12□□□□□ -0.31
Msh3-201ENSMUST00000022220 Pde3bQ61409 1100 aa13.12□□□□□ -0.31
Msh3-201ENSMUST00000022220 Jarid2Q62315 1234 aa13.12□□□□□ -0.31
Msh3-201ENSMUST00000022220 Synj2Q9D2G5 1434 aa13.12□□□□□ -0.31
Msh3-201ENSMUST00000022220 FosbP13346 338 aa13.11□□□□□ -0.31
Retrieved 100 of 22,080 RNA–protein pairs in 16.1 ms