RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DENND5AQ6IQ26 1287 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 KLC3Q6P597 504 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 C16orf89Q6UX73 402 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ARHGAP36Q6ZRI8 547 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PIWIL4Q7Z3Z4 852 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SCD5Q86SK9 330 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 LRRTM3Q86VH5 581 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SCN4BQ8IWT1 228 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SPATA22Q8NHS9 363 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 HASPINQ8TF76 798 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SCG3Q8WXD2 468 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 AZIN2Q96A70 460 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SLC39A13Q96H72 371 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TMEM209Q96SK2 561 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF184Q99676 751 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MRPL57Q9BQC6 102 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 OSBPL1AQ9BXW6 950 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ZYG11BQ9C0D3 744 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MRPL46Q9H2W6 279 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SP110Q9HB58 689 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TRPC7Q9HCX4 862 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TREX1Q9NSU2 369 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF358Q9NW07 568 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TMEM248Q9NWD8 314 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 OSER1Q9NX31 292 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 UBP1Q9NZI7 540 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 NCKIPSDQ9NZQ3 722 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CORO1CQ9ULV4 474 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MAGED2Q9UNF1 606 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RUVBL2Q9Y230 463 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PCDHB5Q9Y5E4 795 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 HS3ST4Q9Y661 456 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 NYNRINQ9P2P1 1898 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 A0A088AWK7 358 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 OR6C75A6NL08 312 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MEI4A8MW99 385 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MSI1O43347 362 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SMNDC1O75940 238 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 VAPBO95292 243 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PIGNO95427 931 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MOCS2O96007 188 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MT-CYBP00156 380 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 AHSGP02765 367 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 COL6A1P12109 1028 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CPB1P15086 417 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 GLDCP23378 1020 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SLC1A2P43004 574 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SERPINH1P50454 418 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 WNT3AP56704 352 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SATB1Q01826 763 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 DSG1Q02413 1049 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 DSC1Q08554 894 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 KLF10Q13118 480 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CUL3Q13618 768 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SEPT6Q14141 434 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 LBRQ14739 615 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 DLG2Q15700 870 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 KCNA10Q16322 511 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 FAM83EQ2M2I3 478 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TRIM71Q2Q1W2 868 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SLC39A12Q504Y0 691 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 NOMO2Q5JPE7 1267 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 AGAP9Q5VTM2 703 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 KDELC1Q6UW63 502 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RANBP10Q6VN20 620 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 NAPRTQ6XQN6 538 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 TMC7Q7Z402 723 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RNF180Q86T96 592 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SLC41A1Q8IVJ1 513 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CPSF7Q8N684 471 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RP9Q8TA86 221 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 DTX3LQ8TDB6 740 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 KCTD4Q8WVF5 259 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PEX13Q92968 403 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 IMP4Q96G21 291 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ELMO2Q96JJ3 720 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MRGPRX2Q96LB1 330 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 FAM193BQ96PV7 902 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 RETREG1Q9H6L5 497 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 EML4Q9HC35 981 aaKnown RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 PRDM5Q9NQX1 630 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 ABI2Q9NYB9 513 aaPredicted RBP7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CLIC5Q9NZA1 410 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 XPR1Q9UBH6 696 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 SFMBT1Q9UHJ3 866 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 CDH22Q9UJ99 828 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 FBXO5Q9UKT4 447 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MIA3Q5JRA6 1907 aa7.34□□□□□ -1.23
VPS13C-206ENST00000558338 MYLKQ15746 1914 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 THSD7BQ9C0I4 1608 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 IGLV3-10A0A075B6K4 115 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 E2F8A0AVK6 867 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 RGSL1A5PLK6 1076 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PHGDHO43175 533 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC7A4O43246 635 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 DCXO43602 365 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PMPCBO75439 489 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ALDH1A1P00352 501 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 RBP1P09455 135 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ITGAXP20702 1163 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms