RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PCDHGC4Q9Y5F7 938 aa29.92■■■□□ 2.38
LIMCH1-211ENST00000509638 PLK4O00444 970 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 ZNF500O60304 480 aaPredicted RBP29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 SOCS5O75159 536 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 GCATO75600 419 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 RNASEH2AO75792 299 aaKnown RBP29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 TRAF2Q12933 501 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 P3H1Q32P28 736 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 CFAP58Q5T655 872 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 PARS2Q7L3T8 475 aaKnown RBP29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 SPATA22Q8NHS9 363 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 OMDQ99983 421 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 DDX47Q9H0S4 455 aaKnown RBP29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 FBXL12Q9NXK8 326 aa29.91■■■□□ 2.38
LIMCH1-211ENST00000509638 CACNA1HO95180 2353 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 CCDC163A0A0D9SF12 145 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 PSMB4P28070 264 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 SKOR1P84550 965 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 CNTN1Q12860 1018 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 PRUNE1Q86TP1 453 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 PRPF39Q86UA1 669 aaKnown RBP29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 HDDC3Q8N4P3 179 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 PAF1Q8N7H5 531 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 GLIS1Q8NBF1 620 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 PDCD6IPQ8WUM4 868 aaKnown RBP29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 SUV39H2Q9H5I1 410 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 CYP8B1Q9UNU6 501 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 TRAFD1O14545 582 aaPredicted RBP29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 MT-CYBP00156 380 aaPredicted RBP29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 SP9P0CG40 484 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 ZNF528Q3MIS6 628 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 WDR5BQ86VZ2 330 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 LONP2Q86WA8 852 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 RLN3Q8WXF3 142 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 FCRL5Q96RD9 977 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 UBP1Q9NZI7 540 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 RAI2Q9Y5P3 530 aa29.9■■■□□ 2.38
LIMCH1-211ENST00000509638 ZNF217O75362 1048 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 ETS1P14921 441 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 P2RY2P41231 377 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 LMNB2Q03252 620 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 KCTD19Q17RG1 926 aaPredicted RBP29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 USP30Q70CQ3 517 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 FAM124AQ86V42 546 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 ZSWIM9Q86XI8 627 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 ATL2Q8NHH9 583 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 ECHDC3Q96DC8 303 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 OXNAD1Q96HP4 312 aaPredicted RBP29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 GORASP1Q9BQQ3 440 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 TDRD1Q9BXT4 1180 aaKnown RBP29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 FAM126AQ9BYI3 521 aaPredicted RBP29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 ITM2CQ9NQX7 267 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 MRFAP1Q9Y605 127 aa29.89■■■□□ 2.38
LIMCH1-211ENST00000509638 C16orf96A6NNT2 1141 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 CCDC188H7C350 402 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 HTRA2O43464 458 aaPredicted RBP29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 ACTN2P35609 894 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 CKAP4Q07065 602 aaKnown RBP29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 AGBL4Q5VU57 503 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 ERN2Q76MJ5 926 aaKnown RBP29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 KBTBD6Q86V97 674 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 KLHL7Q8IXQ5 586 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 TADA1Q96BN2 335 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 HDAC8Q9BY41 377 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 DKK3Q9UBP4 350 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 FZD4Q9ULV1 537 aa29.88■■■□□ 2.37
LIMCH1-211ENST00000509638 TSPAN11A1L157 253 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 IGLV3-19P01714 112 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 ZSCAN5DPP0CG00 497 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 CA4P22748 312 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 NEK3P51956 506 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 SFSWAPQ12872 951 aaKnown RBP29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 SLC14A2Q15849 920 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 WHAMMP3Q1A5X7 153 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 MAP7D1Q3KQU3 841 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 PIP5KL1Q5T9C9 394 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 BRAT1Q6PJG6 821 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 TAB3Q8N5C8 712 aaPredicted RBP29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 FAM160A2Q8N612 972 aaPredicted RBP29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 NELL1Q92832 810 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 SPACA7Q96KW9 195 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 NCKAP1Q9Y2A7 1128 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 PCDHB9Q9Y5E1 797 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 FANCMQ8IYD8 2048 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 USP34Q70CQ2 3546 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 MUC6Q6W4X9 2439 aa29.87■■■□□ 2.37
LIMCH1-211ENST00000509638 PMPCBO75439 489 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 METTL18O95568 372 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 ADRB3P13945 408 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 PCSK7Q16549 785 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 USP39Q53GS9 565 aaKnown RBP29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 LRRC73Q5JTD7 316 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 FAXCQ5TGI0 409 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 FBXL19Q6PCT2 694 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 FRMD1Q8N878 549 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 SPATA4Q8NEY3 305 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 GRK7Q8WTQ7 553 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 FAM131CQ96AQ9 280 aa29.86■■■□□ 2.37
LIMCH1-211ENST00000509638 NEUROG2Q9H2A3 272 aa29.86■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms