RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PFN3P60673 137 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 FANCCQ00597 558 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 RFX8Q6ZV50 586 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 ZSCAN30Q86W11 494 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 ZNF354CQ86Y25 554 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 DCP2Q8IU60 420 aaKnown RBP18.8■□□□□ 0.6
COL7A1-209ENST00000474432 NPWQ8N729 165 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 OR4C6Q8NH72 309 aa18.8■□□□□ 0.6
COL7A1-209ENST00000474432 PNMA8BQ9ULN7 279 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-209ENST00000474432 LY6G6EA0A0G2JKS1 128 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 TSPAN11A1L157 253 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 EIF3CLB5ME19 914 aaKnown RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 EEF2KO00418 725 aaKnown RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 BUB1BO60566 1050 aaPredicted RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 PIGNO95427 931 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 SERPINC1P01008 464 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 ERCC2P18074 760 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 IL1R2P27930 398 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 PAPOLAP51003 745 aaKnown RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 ARHGAP36Q6ZRI8 547 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 PTAR1Q7Z6K3 402 aaPredicted RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 TTC7BQ86TV6 843 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 TP53INP2Q8IXH6 220 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 DENND6BQ8NEG7 585 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 ZNF653Q96CK0 615 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 NSMCE3Q96MG7 304 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 EIF3CQ99613 913 aaKnown RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 CWC15Q9P013 229 aaKnown RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 UBA2Q9UBT2 640 aaPredicted RBP18.79■□□□□ 0.6
COL7A1-209ENST00000474432 U3KQA8 63 aa18.79■□□□□ 0.6
COL7A1-209ENST00000474432 ADAMTS20P59510 1910 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 URB1O60287 2271 aaKnown RBP18.78■□□□□ 0.6
COL7A1-209ENST00000474432 A0A1W2PQJ5 194 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 MMP20O60882 483 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 CSF2P04141 144 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 CDK4P11802 303 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 IGFALSP35858 605 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 RABIFP47224 123 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 HCAR3P49019 387 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 CYP4F3Q08477 520 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 EIF2B5Q13144 721 aaKnown RBP18.78■□□□□ 0.6
COL7A1-209ENST00000474432 SGCGQ13326 291 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 ILKQ13418 452 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 DPYSQ14117 519 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 ZSWIM9Q86XI8 627 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 PSTKQ8IV42 348 aaKnown RBP18.78■□□□□ 0.6
COL7A1-209ENST00000474432 MBNL1Q9NR56 388 aaKnown RBP18.78■□□□□ 0.6
COL7A1-209ENST00000474432 MYO1AQ9UBC5 1043 aa18.78■□□□□ 0.6
COL7A1-209ENST00000474432 ASXL3Q9C0F0 2248 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 NEMP1O14524 444 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 FPGTO14772 594 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 FFAR2O15552 330 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 RNF8O76064 485 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 MYF5P13349 255 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 NME1P15531 152 aaKnown RBP18.77■□□□□ 0.6
COL7A1-209ENST00000474432 RAD51Q06609 339 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 TMEM52BQ4KMG9 183 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 HES3Q5TGS1 186 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 PDCD7Q8N8D1 485 aaKnown RBP18.77■□□□□ 0.6
COL7A1-209ENST00000474432 TP53I13Q8NBR0 393 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-209ENST00000474432 TSEN2Q8NCE0 465 aaKnown RBP18.77■□□□□ 0.6
COL7A1-209ENST00000474432 HCAR2Q8TDS4 363 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 RFFLQ8WZ73 363 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 SYN2Q92777 582 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-209ENST00000474432 ARHGEF26Q96DR7 871 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 SUV39H2Q9H5I1 410 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 DNAJC28Q9NX36 388 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 GPSM3Q9Y4H4 160 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 SCINQ9Y6U3 715 aa18.77■□□□□ 0.6
COL7A1-209ENST00000474432 COL27A1Q8IZC6 1860 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 SCAMP1O15126 338 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 MUSKO15146 869 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 PRPSAP2O60256 369 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 NEBLO76041 1014 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 MYBL1P10243 752 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 DESP17661 470 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 PCK1P35558 622 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 CSNK1DP48730 415 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 INSM1Q01101 510 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 TARDBPQ13148 414 aaKnown RBP eCLIP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 PDE1CQ14123 709 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 PPP6R3Q5H9R7 873 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 TXNRD3NBQ6F5E7 133 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 PARGQ86W56 976 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 ZNF548Q8NEK5 533 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 WRAP53Q9BUR4 548 aaKnown RBP18.76■□□□□ 0.59
COL7A1-209ENST00000474432 ETNK2Q9NVF9 386 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 NLGN3Q9NZ94 848 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 NENFQ9UMX5 172 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 RAXQ9Y2V3 346 aa18.76■□□□□ 0.59
COL7A1-209ENST00000474432 A0A087X0T9 212 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 ARHGAP42A6NI28 874 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 K7ESM1 405 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 PEX11BO96011 259 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 FAM228BP0C875 321 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 CKMT1AP12532 417 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 JUPP14923 745 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 UBASH3AP57075 661 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 HNRNPKP61978 463 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL7A1-209ENST00000474432 DPYSL2Q16555 572 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms