RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ABHD14A-ACY1A0A1B0GW23 586 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 A8MUI8 341 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 PEX11BO96011 259 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 ZDHHC11BP0C7U3 371 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 HMGA1P17096 107 aaKnown RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 LAG3P18627 525 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 GABRR2P28476 465 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 CDH4P55283 916 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 TAS2R39P59534 338 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 OCRLQ01968 901 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 SLC12A1Q13621 1099 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 CCDC117Q8IWD4 279 aaPredicted RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 RAB3IPQ96QF0 476 aaPredicted RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 EBF4Q9BQW3 602 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 TTLL2Q9BWV7 592 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 SCUBE2Q9NQ36 999 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 ARL8BQ9NVJ2 186 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 COMMD8Q9NX08 183 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 AGO1Q9UL18 857 aaKnown RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 SNAP91O60641 907 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 CLDN11O75508 207 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 ATP5HO75947 161 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 LRG1P02750 347 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 FGF3P11487 239 aaPredicted RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 GABRB3P28472 473 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 EPHB1P54762 984 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 USP4Q13107 963 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 LRRC26Q2I0M4 334 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 MBLAC2Q68D91 279 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 LONP2Q86WA8 852 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 LPCAT1Q8NF37 534 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 TTC8Q8TAM2 541 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 PIWIL2Q8TC59 973 aaKnown RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 ZNF398Q8TD17 642 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 CALML6Q8TD86 181 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 DDI1Q8WTU0 396 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 NXNL1Q96CM4 212 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 SLC22A12Q96S37 553 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 LBHD1Q9BQE6 289 aaPredicted RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 CYP4F12Q9HCS2 524 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 APOBEC2Q9Y235 224 aaKnown RBP13.78□□□□□ -0.2
CLK3-203ENST00000454830 PCDHGC4Q9Y5F7 938 aa13.78□□□□□ -0.2
CLK3-203ENST00000454830 NEMP1O14524 444 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 KLF11O14901 512 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 TEX28O15482 410 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 CACNG3O60359 315 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 IGLV3-27P01718 113 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 MYL4P12829 197 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 INSCQ1MX18 579 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 ZNF789Q5FWF6 425 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 RBM20Q5T481 1227 aaKnown RBP13.77□□□□□ -0.2
CLK3-203ENST00000454830 ADGRF1Q5T601 910 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 TPGS2Q68CL5 300 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 TPGS1Q6ZTW0 290 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 CRIPAKQ8N1N5 446 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 TMA16Q96EY4 203 aaKnown RBP13.77□□□□□ -0.2
CLK3-203ENST00000454830 DNAJC1Q96KC8 554 aaKnown RBP13.77□□□□□ -0.2
CLK3-203ENST00000454830 GPR22Q99680 433 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 MAGEH1Q9H213 219 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 INSL5Q9Y5Q6 135 aa13.77□□□□□ -0.2
CLK3-203ENST00000454830 TRIM13O60858 407 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 TGDSO95455 350 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 GRK2P25098 689 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 ITGB8P26012 769 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 RAB10P61026 200 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 DSG1Q02413 1049 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 CCDC15Q0P6D6 951 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 VWA5B1Q5TIE3 1220 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 KCNK13Q9HB14 408 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 NOD2Q9HC29 1040 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 XPR1Q9UBH6 696 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 CPQQ9Y646 472 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 GYG2O15488 501 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 RASSF9O75901 435 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 ARSDP51689 593 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 NAGLUP54802 743 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 ABCE1P61221 599 aaKnown RBP13.77□□□□□ -0.21
CLK3-203ENST00000454830 WDR5P61964 334 aaKnown RBP13.77□□□□□ -0.21
CLK3-203ENST00000454830 NXNQ6DKJ4 435 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 KIAA0930Q6ICG6 404 aaPredicted RBP13.77□□□□□ -0.21
CLK3-203ENST00000454830 OR13C4Q8NGS5 318 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 ARRDC2Q8TBH0 407 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 MRPS31Q92665 395 aaKnown RBP13.77□□□□□ -0.21
CLK3-203ENST00000454830 DDX50Q9BQ39 737 aaKnown RBP13.77□□□□□ -0.21
CLK3-203ENST00000454830 C11orf49Q9H6J7 331 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 GPAMQ9HCL2 828 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 KCNK4Q9NYG8 393 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 MID2Q9UJV3 735 aa13.77□□□□□ -0.21
CLK3-203ENST00000454830 MYO9BQ13459 2157 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 A0A1B0GVM2 712 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 TCAF2A6NFQ2 919 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 GOLGA8CPA6NN73 597 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 ARNTP27540 789 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 PLK1P53350 603 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 CEP97Q8IW35 865 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 OR6K2Q8NGY2 324 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 PTCD2Q8WV60 388 aaKnown RBP13.76□□□□□ -0.21
CLK3-203ENST00000454830 PLD4Q96BZ4 506 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 NSL1Q96IY1 281 aa13.76□□□□□ -0.21
CLK3-203ENST00000454830 PRICKLE1Q96MT3 831 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms