RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 PRKD1Q15139 912 aaPredicted RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 BRMS1LQ5PSV4 323 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 CDHR3Q6ZTQ4 885 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 PTCD3Q96EY7 689 aaKnown RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SLC9A7Q96T83 725 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 AGAP2Q99490 1192 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 SEMA3CQ99985 751 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 IARS2Q9NSE4 1012 aaKnown RBP13.21□□□□□ -0.29
COL18A1-201ENST00000342220 INSL6Q9Y581 213 aa13.21□□□□□ -0.29
COL18A1-201ENST00000342220 TMCC1O94876 653 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 VAPBO95292 243 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 GLUD1P00367 558 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 KITP10721 976 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 SLC6A4P31645 630 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 RPL34P49207 117 aaKnown RBP13.21□□□□□ -0.3
COL18A1-201ENST00000342220 RNF219Q5W0B1 726 aaPredicted RBP13.21□□□□□ -0.3
COL18A1-201ENST00000342220 ITPRIPL1Q6GPH6 555 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 C16orf46Q6P387 395 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 SH2D5Q6ZV89 423 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 TMA16Q96EY4 203 aaKnown RBP13.21□□□□□ -0.3
COL18A1-201ENST00000342220 IFT43Q96FT9 208 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 NSL1Q96IY1 281 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 BTBD10Q9BSF8 475 aa13.21□□□□□ -0.3
COL18A1-201ENST00000342220 PAIP2BQ9ULR5 123 aaKnown RBP13.21□□□□□ -0.3
COL18A1-201ENST00000342220 CCDC22O60826 627 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 C1RP00736 705 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 EPCAMP16422 314 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 GKP32189 559 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CDK16Q00536 496 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 SLC18A2Q05940 514 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 MRPL58Q14197 206 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 LRRC73Q5JTD7 316 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PTAR1Q7Z6K3 402 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 RTL3Q8N8U3 475 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 SKA1Q96BD8 255 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 MECRQ9BV79 373 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CAB39LQ9H9S4 337 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CHD9Q3L8U1 2897 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 FAM237BA0A1B0GVD1 139 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CHADO15335 359 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 GSC2O15499 205 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 DLDP09622 509 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 MYL2P10916 166 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CD68P34810 354 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CTBP1Q13363 440 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PPIGQ13427 754 aaKnown RBP eCLIP13.2□□□□□ -0.33e-17■■■□□ 17.5
COL18A1-201ENST00000342220 TRIP4Q15650 581 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 SLC8B1Q6J4K2 584 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PSTKQ8IV42 348 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 DDX50Q9BQ39 737 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 TLR9Q9NR96 1032 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ARMCX1Q9P291 453 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 MARCOQ9UEW3 520 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PCDHGC4Q9Y5F7 938 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 SHROOM3Q8TF72 1996 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 RALGAPA2Q2PPJ7 1873 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 TYW5A2RUC4 315 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 GRM6O15303 877 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 GYG2O15488 501 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ACSL4O60488 711 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 GCATO75600 419 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ARHGEF15O94989 841 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PARNO95453 639 aaKnown RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ADH1AP07327 375 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ACADSP16219 412 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 EPHB1P54762 984 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CNGA3Q16281 694 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 SMYD5Q6GMV2 418 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 IRGCQ6NXR0 463 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 CMC1Q7Z7K0 106 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 HERC6Q8IVU3 1022 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 OR52K2Q8NGK3 314 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ZSCAN18Q8TBC5 510 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 ATP2A3Q93084 1043 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 HIC2Q96JB3 615 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PNPLA8Q9NP80 782 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 UXTQ9UBK9 157 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PSAT1Q9Y617 370 aa13.2□□□□□ -0.3
COL18A1-201ENST00000342220 PBX2P40425 430 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 GLRBP48167 497 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 KPNB1Q14974 876 aaKnown RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 CCDC6Q16204 474 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 GPR158Q5T848 1215 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 NADSYN1Q6IA69 706 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 GRASPQ7Z6J2 395 aaPredicted RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 ALYREFQ86V81 257 aaKnown RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 NDUFAF2Q8N183 169 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 ZNF366Q8N895 744 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 ARMC5Q96C12 935 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 SGF29Q96ES7 293 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 SRPK1Q96SB4 655 aaKnown RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 DCLRE1BQ9H816 532 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 FAM8A1Q9UBU6 413 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 MTO1Q9Y2Z2 717 aaKnown RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 COPEO14579 308 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 GSTA2P09210 222 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 UBTFL6P0CB48 400 aaPredicted RBP13.19□□□□□ -0.3
COL18A1-201ENST00000342220 TSHRP16473 764 aa13.19□□□□□ -0.3
COL18A1-201ENST00000342220 FDFT1P37268 417 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms