RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TRIM5Q9C035 493 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 ITM2BQ9Y287 266 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 TDRD6O60522 2096 aaKnown RBP25.03■■□□□ 1.6
UPF3A-209ENST00000492270 SPINT1O43278 529 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 GJC1P36383 396 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 NUDT1P36639 197 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 SIM1P81133 766 aaPredicted RBP25.02■■□□□ 1.6
UPF3A-209ENST00000492270 TSR1Q2NL82 804 aaKnown RBP25.02■■□□□ 1.6
UPF3A-209ENST00000492270 TMEM259Q4ZIN3 620 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 LRRC73Q5JTD7 316 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 GDPD4Q6W3E5 623 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 SETD7Q8WTS6 366 aaKnown RBP25.02■■□□□ 1.6
UPF3A-209ENST00000492270 OSBPL1AQ9BXW6 950 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 NHEJ1Q9H9Q4 299 aaPredicted RBP25.02■■□□□ 1.6
UPF3A-209ENST00000492270 BTBD3Q9Y2F9 522 aa25.02■■□□□ 1.6
UPF3A-209ENST00000492270 PRAMEF26H0Y7S4 382 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 TLR4O00206 839 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 PIGNO95427 931 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 CD48P09326 243 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 RGRP47804 291 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 CCT8P50990 548 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 NXPH1P58417 271 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 ATP13A4Q4VNC1 1196 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 SLC45A4Q5BKX6 768 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 SPATS2Q86XZ4 545 aaKnown RBP25.01■■□□□ 1.59
UPF3A-209ENST00000492270 MFSD2AQ8NA29 543 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 TSC1Q92574 1164 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 SKA1Q96BD8 255 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 RBSNQ9H1K0 784 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 SP110Q9HB58 689 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 UVRAGQ9P2Y5 699 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 PCOLCE2Q9UKZ9 415 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 PCDHGB2Q9Y5G2 931 aa25.01■■□□□ 1.59
UPF3A-209ENST00000492270 A0A1B0GTQ1 180 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 AKR1B15C9JRZ8 316 aaPredicted RBP25■■□□□ 1.59
UPF3A-209ENST00000492270 AP1G1O43747 822 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 CBFA2T3O75081 653 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 PROSCO94903 275 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 TOP3BO95985 862 aaKnown RBP25■■□□□ 1.59
UPF3A-209ENST00000492270 TMEM253P0C7T8 217 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 CDH6P55285 790 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 FOXC1Q12948 553 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 MMRN1Q13201 1228 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 FGL2Q14314 439 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 STAT4Q14765 748 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 SHBQ15464 509 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 DBX2Q6ZNG2 339 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 CNGA4Q8IV77 575 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 TMEM145Q8NBT3 493 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 TSEN2Q8NCE0 465 aaKnown RBP25■■□□□ 1.59
UPF3A-209ENST00000492270 CCDC42Q96M95 316 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 ELF4Q99607 663 aaPredicted RBP25■■□□□ 1.59
UPF3A-209ENST00000492270 GDF3Q9NR23 364 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 KLHL11Q9NVR0 708 aa25■■□□□ 1.59
UPF3A-209ENST00000492270 PALMO75781 387 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 TAS2R40P59535 323 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 RAD51Q06609 339 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 IL10RBQ08334 325 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 KRT81Q14533 505 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 TRIP6Q15654 476 aaKnown RBP24.99■■□□□ 1.59
UPF3A-209ENST00000492270 KIAA1161Q6NSJ0 714 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 TMCO3Q6UWJ1 677 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 LZTR1Q8N653 840 aa24.99■■□□□ 1.59
UPF3A-209ENST00000492270 IPO11Q9UI26 975 aaKnown RBP24.99■■□□□ 1.59
UPF3A-209ENST00000492270 SPEGQ15772 3267 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 TMEM110-MUSTN1A8MSY1 372 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 FLRT2O43155 660 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 ITIH2P19823 946 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 HNRNPA2B1P22626 353 aaKnown RBP24.98■■□□□ 1.59
UPF3A-209ENST00000492270 IL4RP24394 825 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 ARSEP51690 589 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 CLDN2P57739 230 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 HADHQ16836 314 aaKnown RBP24.98■■□□□ 1.59
UPF3A-209ENST00000492270 GCNT7Q6ZNI0 430 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 GATAD2AQ86YP4 633 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 TC2NQ8N9U0 490 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 BAHD1Q8TBE0 780 aaPredicted RBP24.98■■□□□ 1.59
UPF3A-209ENST00000492270 FAM71BQ8TC56 605 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 RAB7BQ96AH8 199 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 SLC17A9Q9BYT1 436 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 CPEB1Q9BZB8 566 aaKnown RBP24.98■■□□□ 1.59
UPF3A-209ENST00000492270 PCDHB9Q9Y5E1 797 aa24.98■■□□□ 1.59
UPF3A-209ENST00000492270 MUSKO15146 869 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 BUB1BO60566 1050 aaPredicted RBP24.97■■□□□ 1.59
UPF3A-209ENST00000492270 SPINK2P20155 84 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 RPS21P63220 83 aaKnown RBP24.97■■□□□ 1.59
UPF3A-209ENST00000492270 TTC7BQ86TV6 843 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 IQCHQ86VS3 1027 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 FEM1CQ96JP0 617 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 CINPQ9BW66 212 aaPredicted RBP24.97■■□□□ 1.59
UPF3A-209ENST00000492270 ANGPTL2Q9UKU9 493 aa24.97■■□□□ 1.59
UPF3A-209ENST00000492270 PTPRBP23467 1997 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 COL5A1P20908 1838 aaPredicted RBP24.96■■□□□ 1.59
UPF3A-209ENST00000492270 IGLON5A6NGN9 336 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 NEMP1O14524 444 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 AREL1O15033 823 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 RAD51BO15315 384 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 TSPAN6O43657 245 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 PCDHGA12O60330 932 aa24.96■■□□□ 1.59
UPF3A-209ENST00000492270 DFNA5O60443 496 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms