RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TRIM59Q8IWR1 403 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 PLPP6Q8IY26 295 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 ZNF683Q8IZ20 524 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 FMR1NBQ8N0W7 255 aaPredicted RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 ARL10Q8N8L6 244 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 ZNF397Q8NF99 534 aaPredicted RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 OR6C4Q8NGE1 309 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 GFM1Q96RP9 751 aaKnown RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 SPON2Q9BUD6 331 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 LRRC61Q9BV99 259 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 SYNCQ9H7C4 482 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 ATP13A1Q9HD20 1204 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 PIGVQ9NUD9 493 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 PCDHGC3Q9UN70 934 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 DOLKQ9UPQ8 538 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS29-201ENST00000360579 TRPM6Q9BX84 2022 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 TLN1Q9Y490 2541 aaKnown RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 IGLV3-10A0A075B6K4 115 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 C16orf96A6NNT2 1141 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 NVLO15381 856 aaKnown RBP14.07□□□□□ -0.16
VPS29-201ENST00000360579 SUV39H1O43463 412 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 JMJD7P0C870 316 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 TSHRP16473 764 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 USP8P40818 1118 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 PPARDQ03181 441 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 C1orf61Q13536 156 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 ELOCQ15369 112 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 FAXCQ5TGI0 409 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 MACC1Q6ZN28 852 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 SDR16C5Q8N3Y7 309 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 WDTC1Q8N5D0 677 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 ZSCAN1Q8NBB4 408 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 C1orf131Q8NDD1 294 aaKnown RBP14.07□□□□□ -0.16
VPS29-201ENST00000360579 OR7D4Q8NG98 312 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 EXTL1Q92935 676 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 ISG20Q96AZ6 181 aaKnown RBP14.07□□□□□ -0.16
VPS29-201ENST00000360579 CENPTQ96BT3 561 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 PGAP3Q96FM1 320 aaPredicted RBP14.07□□□□□ -0.16
VPS29-201ENST00000360579 TMEM74Q96NL1 305 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 NPY6RQ99463 290 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 TCEAL2Q9H3H9 227 aaPredicted RBP14.07□□□□□ -0.16
VPS29-201ENST00000360579 ZDHHC6Q9H6R6 413 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 ACP6Q9NPH0 428 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.07□□□□□ -0.16
VPS29-201ENST00000360579 MPP6Q9NZW5 540 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 BOLA1Q9Y3E2 137 aa14.07□□□□□ -0.16
VPS29-201ENST00000360579 D6RAR5 112 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 NOBOXO60393 691 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ZMPSTE24O75844 475 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 NTRK1P04629 796 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ALPIP09923 528 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ITGB6P18564 788 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 CCKBRP32239 447 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ETFBP38117 255 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 MARSP56192 900 aaKnown RBP14.06□□□□□ -0.16
VPS29-201ENST00000360579 GEMIN4P57678 1058 aaKnown RBP14.06□□□□□ -0.16
VPS29-201ENST00000360579 DEUP1Q05D60 604 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ZNF805Q5CZA5 627 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 TTI2Q6NXR4 508 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 PASD1Q8IV76 773 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 RYBPQ8N488 228 aaPredicted RBP14.06□□□□□ -0.16
VPS29-201ENST00000360579 TMEM159Q96B96 161 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 OSBPL1AQ9BXW6 950 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 ZYG11BQ9C0D3 744 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 GULP1Q9UBP9 304 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 SEPT3Q9UH03 358 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 FCF1Q9Y324 198 aaKnown RBP14.06□□□□□ -0.16
VPS29-201ENST00000360579 ZDHHC9Q9Y397 364 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 PCDHB11Q9Y5F2 797 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 AHCTF1Q8WYP5 2266 aa14.06□□□□□ -0.16
VPS29-201ENST00000360579 GOLGA6L4A6NEF3 574 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 PPFIA2O75334 1257 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 ERBB2P04626 1255 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 KRT9P35527 623 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 EIF4A3P38919 411 aaKnown RBP14.05□□□□□ -0.16
VPS29-201ENST00000360579 ABL2P42684 1182 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 SULT1E1P49888 294 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 ARF5P84085 180 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 GNA12Q03113 381 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 PTK2Q05397 1052 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 POLD3Q15054 466 aaPredicted RBP14.05□□□□□ -0.16
VPS29-201ENST00000360579 TGIF1Q15583 401 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 COLEC12Q5KU26 742 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 MANEAQ5SRI9 462 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 OTUD1Q5VV17 481 aaPredicted RBP14.05□□□□□ -0.16
VPS29-201ENST00000360579 KLHL10Q6JEL2 608 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 B3GNT8Q7Z7M8 397 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 VPS36Q86VN1 386 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 NT5C3BQ969T7 300 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 CCDC74AQ96AQ1 378 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 HAPLN3Q96S86 360 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 TM6SF2Q9BZW4 377 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 CLPBQ9H078 707 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 ANLNQ9NQW6 1124 aa14.05□□□□□ -0.16
VPS29-201ENST00000360579 TMEM110-MUSTN1A8MSY1 372 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 BECN2A8MW95 431 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 I6L893 689 aaPredicted RBP14.04□□□□□ -0.16
VPS29-201ENST00000360579 AREL1O15033 823 aa14.04□□□□□ -0.16
VPS29-201ENST00000360579 CASC3O15234 703 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms