RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CACTIN-AS1Q8N1I8 211 aa16.43■□□□□ 0.22
CLN3-246ENST00000636228 MSANTD4Q8NCY6 345 aa16.43■□□□□ 0.22
CLN3-246ENST00000636228 ZNF548Q8NEK5 533 aaPredicted RBP16.43■□□□□ 0.22
CLN3-246ENST00000636228 SNIP1Q8TAD8 396 aaKnown RBP16.43■□□□□ 0.22
CLN3-246ENST00000636228 ARHGEF2Q92974 986 aaKnown RBP16.43■□□□□ 0.22
CLN3-246ENST00000636228 VOPP1Q96AW1 172 aa16.43■□□□□ 0.22
CLN3-246ENST00000636228 KLF6Q99612 283 aaPredicted RBP16.43■□□□□ 0.22
CLN3-246ENST00000636228 GANQ9H2C0 597 aa16.43■□□□□ 0.22
CLN3-246ENST00000636228 GPR27Q9NS67 375 aa16.43■□□□□ 0.22
CLN3-246ENST00000636228 SPTY2D1-AS1A0A0U1RR47 76 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 NEMP2A6NFY4 417 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 KRIT1O00522 736 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 NEMP1O14524 444 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 EPHB6O15197 1021 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 CSF2P04141 144 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 CYP1A1P04798 512 aaPredicted RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 ITIH2P19823 946 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 MMP8P22894 467 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 ACTN2P35609 894 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 POLR2FP61218 127 aaKnown RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 HNRNPKP61978 463 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-246ENST00000636228 CDKN3Q16667 212 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 MANEALQ5VSG8 457 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 CRTC1Q6UUV9 634 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 KYAT3Q6YP21 454 aaKnown RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 CCDC185Q8N715 623 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 BAP1Q92560 729 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 IFT43Q96FT9 208 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 FCRL3Q96P31 734 aaPredicted RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 UBL7Q96S82 380 aaPredicted RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 PCDHB18PQ96TA0 734 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 C1QTNF2Q9BXJ5 285 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 ABCG4Q9H172 646 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 TCEAL2Q9H3H9 227 aaPredicted RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 NLRC4Q9NPP4 1024 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 FAM207AQ9NSI2 230 aaPredicted RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 TMEM51Q9NW97 253 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 NEU3Q9UQ49 428 aa16.42■□□□□ 0.22
CLN3-246ENST00000636228 FASNP49327 2511 aaKnown RBP16.42■□□□□ 0.22
CLN3-246ENST00000636228 CPED1A4D0V7 1026 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 C2CD4BA6NLJ0 364 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 FPGTO14772 594 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 AP1G1O43747 822 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 USP12O75317 370 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 CSO75390 466 aaKnown RBP16.41■□□□□ 0.22
CLN3-246ENST00000636228 LRIG2O94898 1065 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 UGT2B4P06133 528 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 RHOQP17081 205 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 SDC4P31431 198 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 RABIFP47224 123 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 CDR2Q01850 454 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 TLE3Q04726 772 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 EIF2B5Q13144 721 aaKnown RBP16.41■□□□□ 0.22
CLN3-246ENST00000636228 DEFB133Q30KQ1 61 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 MYLK3Q32MK0 819 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 ARL13BQ3SXY8 428 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 ZNF805Q5CZA5 627 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 ARCQ7LC44 396 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 PARGQ86W56 976 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 DCP2Q8IU60 420 aaKnown RBP16.41■□□□□ 0.22
CLN3-246ENST00000636228 SPACA3Q8IXA5 215 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 PYROXD2Q8N2H3 581 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 IFI44Q8TCB0 444 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 LMX1AQ8TE12 382 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 ISG20Q96AZ6 181 aaKnown RBP16.41■□□□□ 0.22
CLN3-246ENST00000636228 KLHL32Q96NJ5 620 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 NUP62CLQ9H1M0 184 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 DACH1Q9UI36 760 aa16.41■□□□□ 0.22
CLN3-246ENST00000636228 CASC3O15234 703 aaKnown RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 TSPAN6O43657 245 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 MMP20O60882 483 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 ZIC2O95409 532 aaPredicted RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 PLEKP08567 350 aaPredicted RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 NME1P15531 152 aaKnown RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 JUNDP17535 347 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 TGM2P21980 687 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 EEF1GP26641 437 aaKnown RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 SOX5P35711 763 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 MAPKAPK2P49137 400 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 HDAC4P56524 1084 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 CXADRP78310 365 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 GABREP78334 506 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 C1orf61Q13536 156 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 POLD3Q15054 466 aaPredicted RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 GUSBP11Q6P575 273 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 TTC7BQ86TV6 843 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 ZNF354CQ86Y25 554 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 RBFAQ8N0V3 343 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 FAM181AQ8N9Y4 354 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 OR2AP1Q8NGE2 309 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 FAM174AQ8TBP5 190 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 MAPK15Q8TD08 544 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 FAM172AQ8WUF8 416 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 SLC39A7Q92504 469 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 TBC1D31Q96DN5 1066 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 LENG8Q96PV6 779 aaPredicted RBP16.4■□□□□ 0.22
CLN3-246ENST00000636228 DEPDC7Q96QD5 511 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 LGMNQ99538 433 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 KLC2Q9H0B6 622 aa16.4■□□□□ 0.22
CLN3-246ENST00000636228 TMEM248Q9NWD8 314 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms