RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IGKV6D-21A0A0A0MT36 114 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 BTBD18B2RXH4 712 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 H3BUI4 141 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PSMA7O14818 248 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SPTLC2O15270 562 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PHF2O75151 1096 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PSMD10O75832 226 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ALDH1A2O94788 518 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SLU7O95391 586 aaKnown RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 TDP2O95551 362 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 LAMP2P13473 410 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 BMP7P18075 431 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 HOXC8P31273 242 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ANP32AP39687 249 aaKnown RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 KIR2DL3P43628 341 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 BPIFB4P59827 614 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 STK4Q13043 487 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PRPF4BQ13523 1007 aaKnown RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 IL10RAQ13651 578 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PUM1Q14671 1186 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS53-212ENST00000572259 PPA1Q15181 289 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 NPY5RQ15761 445 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 CALCRLQ16602 461 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 C9orf50Q5SZB4 431 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ZNF618Q5T7W0 954 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 FAM109BQ6ICB4 259 aaPredicted RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 RAB12Q6IQ22 244 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ARHGEF18Q6ZSZ5 1173 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 OTUD6AQ7L8S5 288 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SZRD1Q7Z422 152 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ADSSL1Q8N142 457 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 TMCO5AQ8N6Q1 288 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 USP38Q8NB14 1042 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PHOSPHO2Q8TCD6 241 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 ATP8B4Q8TF62 1192 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SNX33Q8WV41 574 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SEPT8Q92599 483 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 APBB2Q92870 758 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 RNF125Q96EQ8 232 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 TMX3Q96JJ7 454 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 MBOAT7Q96N66 472 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 JPH2Q9BR39 696 aaPredicted RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 KRTAP4-11Q9BYQ6 195 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 DNAI2Q9GZS0 605 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 PDCL3Q9H2J4 239 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SLC6A15Q9H2J7 730 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 INTS10Q9NVR2 710 aaKnown RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 RABL2AQ9UBK7 228 aaPredicted RBP6.38□□□□□ -1.39
VPS53-212ENST00000572259 PCDHA12Q9UN75 941 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 DTNAQ9Y4J8 743 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 UMODL1Q5DID0 1318 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 LAMA3Q16787 3333 aa6.38□□□□□ -1.39
VPS53-212ENST00000572259 SMIM35A0A1B0GVV1 85 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 MBLAC1A4D2B0 266 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 AGAP14A8MT82 685 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 PIP5K1BO14986 540 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 CHMP2AO43633 222 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ASNA1O43681 348 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 B4GALT3O60512 393 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 NEMFO60524 1076 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 BEST1O76090 585 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 TOX4O94842 621 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ENDOD1O94919 500 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 CCNE2O96020 404 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 CXCL10P02778 98 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ATP5BP06576 529 aaKnown RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 KRT13P13646 458 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 HLA-DPA1P20036 260 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 KLRC1P26715 233 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ADSLP30566 484 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 QARSP47897 775 aaKnown RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 AARSP49588 968 aaKnown RBP eCLIP6.37□□□□□ -1.39
VPS53-212ENST00000572259 EPHB4P54760 987 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 PER3P56645 1201 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 PSMC5P62195 406 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ADAM17P78536 824 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 IL1RL1Q01638 556 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 GUCY1B3Q02153 619 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.37□□□□□ -1.39
VPS53-212ENST00000572259 CUL4BQ13620 913 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 BAK1Q16611 211 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 C19orf54Q5BKX5 351 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 XKR3Q5GH77 459 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ATPAF1Q5TC12 328 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 MTHFD1LQ6UB35 978 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 TRMT1LQ7Z2T5 733 aaKnown RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 NUP54Q7Z3B4 507 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 CCDC60Q8IWA6 550 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 TAGAPQ8N103 731 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 METTL13Q8N6R0 699 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ANKRD53Q8N9V6 530 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 SYT8Q8NBV8 401 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 C3orf20Q8ND61 904 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ETNPPLQ8TBG4 499 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 DNAJB3Q8WWF6 145 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ZNF606Q8WXB4 792 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 LENG9Q96B70 501 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 RPL10LQ96L21 214 aaKnown RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 SNX22Q96L94 193 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 FNBP1Q96RU3 617 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms