RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TCF3P15923 654 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 GPR15P49685 360 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 SGO1Q5FBB7 561 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF618Q5T7W0 954 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 PRR23BQ6ZRT6 265 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TDRD1Q9BXT4 1180 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TUT1Q9H6E5 874 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NMRK2Q9NPI5 230 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 DDX18Q9NVP1 670 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 CLN6Q9NWW5 311 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 LIMD1Q9UGP4 676 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 PHF11Q9UIL8 331 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NRCAMQ92823 1304 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 CCDC182A6NF36 153 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 KLF11O14901 512 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NOL4O94818 638 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 VAPBO95292 243 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ERICH5Q6P6B1 374 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF554Q86TJ5 538 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 SVOPLQ8N434 492 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MYLPFQ96A32 169 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ABI2Q9NYB9 513 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 FAM237BA0A1B0GVD1 139 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ALDH1A2O94788 518 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 RHOCP08134 193 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MLH1P40692 756 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 GRM3Q14832 879 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 CLYBLQ8N0X4 340 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC4A11Q8NBS3 891 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 FAM13CQ8NE31 585 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 L3MBTL3Q96JM7 780 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MBOAT7Q96N66 472 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 PIDD1Q9HB75 910 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ANKHQ9HCJ1 492 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NUDT5Q9UKK9 219 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 AP4B1Q9Y6B7 739 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 KIF13AQ9H1H9 1805 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 F8VP50 259 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC28A1O00337 649 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 CAPGP40121 348 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NEDD8Q15843 81 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 PGS1Q32NB8 556 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NEK5Q6P3R8 708 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 GLT6D1Q7Z4J2 308 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MILR1Q7Z6M3 343 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TTC7BQ86TV6 843 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MCCC1Q96RQ3 725 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 YTHDF1Q9BYJ9 559 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TRIM8Q9BZR9 551 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 MOV10Q9HCE1 1003 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 A0A1B0GUL6 1792 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NME5P56597 212 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 NR1D2Q14995 579 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TCEAL1Q15170 157 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 RSBN1Q5VWQ0 802 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 ERFP50548 548 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 APOBEC3HQ6NTF7 200 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 OOSP2Q86WS3 158 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 TMEM159Q96B96 161 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 DEPDC7Q96QD5 511 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 APBA2Q99767 749 aa10.39□□□□□ -0.75
CCDC88A-202ENST00000336838 E5RJQ4 531 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 MTTPP55157 894 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 FBXW4P57775 412 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 GRIK4Q16099 956 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 OVOS1Q6IE37 1185 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ERAP2Q6P179 960 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 HDDC2Q7Z4H3 204 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 FCGR1BQ92637 280 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SERAC1Q96JX3 654 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 C1orf21Q9H246 121 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ATP6V1HQ9UI12 483 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 CDH22Q9UJ99 828 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 PAICSP22234 425 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 RBL1P28749 1068 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 GRIA3P42263 894 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC5A9Q2M3M2 681 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC25A52Q3SY17 297 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 POU5F2Q8N7G0 328 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 OR2T34Q8NGX1 318 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 OR2T3Q8NH03 318 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 CYP4F12Q9HCS2 524 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ITGB4P16144 1822 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 HSMCR30P0CW71 290 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SPATA31C1P0DKV0 1188 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 GYS1P13807 737 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 YAF2Q8IY57 180 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 HGH1Q9BTY7 390 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ELP3Q9H9T3 547 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 OR12D3Q9UGF7 316 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 MATN2O00339 956 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 FGFR1P11362 822 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ATP1A4Q13733 1029 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 MGAT5BQ3V5L5 792 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 GALNT15Q8N3T1 639 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 RAB2BQ8WUD1 216 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SLITRK2Q9H156 845 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ERGIC3Q9Y282 383 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 V9GYQ6 96 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms