RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 YAF2Q8IY57 180 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 SRPK1Q96SB4 655 aaKnown RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 RAD9AQ99638 391 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 SUDS3Q9H7L9 328 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 SLC28A3Q9HAS3 691 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TGM5O43548 720 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 NDUFS3O75489 264 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 DRD4P21917 467 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 ZCCHC23Q6ZST2 131 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 LDB1Q86U70 411 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 GANCQ8TET4 914 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 CAB39LQ9H9S4 337 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 BHMG1C9JSJ3 638 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 E5RI56 91 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TNFRSF10BO14763 440 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 SNAP91O60641 907 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 CLDN11O75508 207 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 HSPA8P11142 646 aaKnown RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 BGNP21810 368 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 ITGB8P26012 769 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 GP5P40197 560 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 NKX3-2P78367 333 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TSTA3Q13630 321 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 ATG16L1Q676U5 607 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 CAND1Q86VP6 1230 aaKnown RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 C12orf76Q8N812 135 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-213ENST00000620219 TRIM55Q9BYV6 548 aa15.95■□□□□ 0.14
CPSF1-213ENST00000620219 ERI2A8K979 691 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 GIPC1O14908 333 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ABL2P42684 1182 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 GALNT2Q10471 571 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 CRLF3Q8IUI8 442 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 SPATA6LQ8N4H0 392 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 SMG7Q92540 1137 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 MCOLN1Q9GZU1 580 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 USP15Q9Y4E8 981 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 SLC30A1Q9Y6M5 507 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ANK1P16157 1881 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 PRKCGP05129 697 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 CTPS1P17812 591 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 HCAR3P49019 387 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 UGP2Q16851 508 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 OTUD1Q5VV17 481 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 MECRQ9BV79 373 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 TSSK1BQ9BXA7 367 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 FBXO6Q9NRD1 293 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 PHTF1Q9UMS5 762 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 PCDHB9Q9Y5E1 797 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ACTL7AQ9Y615 435 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 TOP3BO95985 862 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 NMBRP28336 390 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 CDC25CP30307 473 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ANKRD20A4Q4UJ75 823 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ADGRF1Q5T601 910 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 CMTR2Q8IYT2 770 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 C17orf80Q9BSJ5 609 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 TMEM109Q9BVC6 243 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 MANSC1Q9H8J5 431 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 GRID1Q9ULK0 1009 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 FCF1Q9Y324 198 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 LAMA2P24043 3122 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 TPP1O14773 563 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ZWINTO95229 277 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 KCNA4P22459 653 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 ST8SIA6P61647 398 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 SEMG2Q02383 582 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 SPANXN3Q5MJ09 141 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 GRIN3AQ8TCU5 1115 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 AGAP2Q99490 1192 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 AGO1Q9UL18 857 aaKnown RBP15.94■□□□□ 0.14
CPSF1-213ENST00000620219 BACE2Q9Y5Z0 518 aa15.94■□□□□ 0.14
CPSF1-213ENST00000620219 A0A1B0GVM2 712 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 TCAF2A6NFQ2 919 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 PPM1FP49593 454 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 CREMQ03060 361 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 PCID2Q5JVF3 399 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 ESRP1Q6NXG1 681 aaKnown RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 KLC3Q6P597 504 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 TRIM42Q8IWZ5 723 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 HJURPQ8NCD3 748 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 ATXN2LQ8WWM7 1075 aaKnown RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 NDNQ99608 321 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 MAN1C1Q9NR34 630 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.93■□□□□ 0.145e-7■■□□□ 13.3
CPSF1-213ENST00000620219 RAD54BQ9Y620 910 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 MYOGP15173 224 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 SCAPQ12770 1279 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 FBXW10Q5XX13 1052 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 PPP1R2P1Q96PQ5 205 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 C2orf49Q9BVC5 232 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 TNKS2Q9H2K2 1166 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 TLR9Q9NR96 1032 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 HCFC1R1Q9NWW0 138 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 IGSF9Q9P2J2 1179 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 C2orf81A6NN90 581 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 WDR4P57081 412 aaKnown RBP15.93■□□□□ 0.14
CPSF1-213ENST00000620219 DSG1Q02413 1049 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 CDK18Q07002 472 aa15.93■□□□□ 0.14
CPSF1-213ENST00000620219 GPNMBQ14956 572 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms