RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SLC5A2P31639 672 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SYKP43405 635 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 ACADSBP45954 432 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 YWHAZP63104 245 aaKnown RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SRSF6Q13247 344 aaKnown RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 AUHQ13825 339 aaKnown RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 TAF5Q15542 800 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 ZNF574Q6ZN55 896 aaPredicted RBP13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SLC35F3Q8IY50 421 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 PPM1KQ8N3J5 372 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 ATP11CQ8NB49 1132 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 GRIN3AQ8TCU5 1115 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SGF29Q96ES7 293 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 CCDC114Q96M63 670 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 NT5C1BQ96P26 610 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 BOCQ9BWV1 1114 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 HDAC8Q9BY41 377 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 VANGL2Q9ULK5 521 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 PCDHGA7Q9Y5G6 932 aa13.03□□□□□ -0.32
SCAF11-208ENST00000546534 SYNJ2BP-COX16A0A087WUM0 186 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 PLD2O14939 933 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 SLC16A3O15427 465 aaKnown RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 SPINT1O43278 529 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 GCATO75600 419 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 ITGB2P05107 769 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 SLC2A3P11169 496 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 CCR1P32246 355 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 GGCXP38435 758 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 RABIFP47224 123 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 RPIAP49247 311 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 NDUFA8P51970 172 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 EIF2B5Q13144 721 aaKnown RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 C1orf61Q13536 156 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 PDE1CQ14123 709 aaPredicted RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 SPIDRQ14159 915 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 KIF26BQ2KJY2 2108 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 DENND1BQ6P3S1 775 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 RBFAQ8N0V3 343 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 WDR48Q8TAF3 677 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 NAT6Q93015 286 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 RNF166Q96A37 237 aaPredicted RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 LIN37Q96GY3 246 aaPredicted RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 PSMB7Q99436 277 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 CCDC3Q9BQI4 270 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 MUC3BQ9H195 1237 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 TCEAL2Q9H3H9 227 aaPredicted RBP13.02□□□□□ -0.33
SCAF11-208ENST00000546534 SYNDIG1Q9H7V2 258 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 FAM204AQ9H8W3 233 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 DDIT4Q9NX09 232 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 COX16Q9P0S2 106 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 ANKMY1Q9P2S6 941 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 VPS51Q9UID3 782 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 TBC1D30Q9Y2I9 924 aa13.02□□□□□ -0.33
SCAF11-208ENST00000546534 E5RJQ4 531 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 NTN3O00634 580 aaPredicted RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 CLDN11O75508 207 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 AFPP02771 609 aaKnown RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 UGT1A5P35504 534 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 FMO5P49326 533 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 NEK3P51956 506 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 ADKP55263 362 aaKnown RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 RPS21P63220 83 aaKnown RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 KRT83P78385 493 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 CDK17Q00537 523 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 KIAA1161Q6NSJ0 714 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 LINGO4Q6UY18 593 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 KRBA2Q6ZNG9 492 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 RRAGAQ7L523 313 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 B3GNT8Q7Z7M8 397 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 C14orf80Q86SX3 495 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 TMEM110Q86TL2 294 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 JAMLQ86YT9 394 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 FBXO39Q8N4B4 442 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 STK32AQ8WU08 396 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 GLMNQ92990 594 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 FEM1CQ96JP0 617 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 KLF6Q99612 283 aaPredicted RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 REPIN1Q9BWE0 567 aaKnown RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 TNKS2Q9H2K2 1166 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 THAP9Q9H5L6 903 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 EPB41L5Q9HCM4 733 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 SPASTQ9UBP0 616 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 ARMCX3Q9UH62 379 aaPredicted RBP13.01□□□□□ -0.33
SCAF11-208ENST00000546534 IL36AQ9UHA7 158 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 PADI4Q9UM07 663 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 FADS3Q9Y5Q0 445 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 HS3ST4Q9Y661 456 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 WASF2Q9Y6W5 498 aa13.01□□□□□ -0.33
SCAF11-208ENST00000546534 RP1P56715 2156 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 FPGTO14772 594 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 LEFTY1O75610 366 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 CNTN5O94779 1100 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 ENDOD1O94919 500 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 NTRK1P04629 796 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 ADRB3P13945 408 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 HGFP14210 728 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PRCPP42785 496 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PMS1P54277 932 aaKnown RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 INHBCP55103 352 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 CDH4P55283 916 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms