RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CIR1Q86X95 450 aaPredicted RBP14.44□□□□□ -0.1
CUX1-209ENST00000487284 MPP5Q8N3R9 675 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 ARHGEF2Q92974 986 aaKnown RBP14.44□□□□□ -0.1
CUX1-209ENST00000487284 HLA-CQ95604 372 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 CFAP36Q96G28 342 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 PRICKLE1Q96MT3 831 aaPredicted RBP14.44□□□□□ -0.1
CUX1-209ENST00000487284 PPP1R2P1Q96PQ5 205 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 FCRL5Q96RD9 977 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 CYTH2Q99418 400 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 TRPV4Q9HBA0 871 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 GLOD4Q9HC38 313 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 ZNF510Q9Y2H8 683 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 MYOFQ9NZM1 2061 aa14.44□□□□□ -0.1
CUX1-209ENST00000487284 SDR42E2A6NKP2 422 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 HEPACAM2A8MVW5 462 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 POC1B-GALNT4F8VUJ3 575 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 RAMP2O60895 175 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 STX2P32856 288 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CDH4P55283 916 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 TNK2Q07912 1038 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 NR1H3Q13133 447 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 HNRNPDQ14103 355 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 STEAP4Q687X5 459 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 TANGO2Q6ICL3 276 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 UNC5AQ6ZN44 842 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 EXOC3L1Q86VI1 746 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 FAM217AQ8IXS0 508 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CYP4X1Q8N118 509 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CFAP52Q8N1V2 620 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 USP33Q8TEY7 942 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 STAMBPL1Q96FJ0 436 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 OXNAD1Q96HP4 312 aaPredicted RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 NAT9Q9BTE0 207 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CAPS2Q9BXY5 557 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CNOT10Q9H9A5 744 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 LRRC40Q9H9A6 602 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CASS4Q9NQ75 786 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 PSMC3IPQ9P2W1 217 aaPredicted RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 WNT6Q9Y6F9 365 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 GFRA2O00451 464 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 HLA-DQB2P05538 268 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 PRKCHP24723 683 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 MGAT1P26572 445 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 OR1E1P30953 314 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 MDH1P40925 334 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 RPS24P62847 133 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 IL10RBQ08334 325 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 SERINC3Q13530 473 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 SPARCL1Q14515 664 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 EFTUD2Q15029 972 aaKnown RBP eCLIP14.43□□□□□ -0.1
CUX1-209ENST00000487284 POLD3Q15054 466 aaPredicted RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 TMED2Q15363 201 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CHST9Q7L1S5 443 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 OTOP3Q7RTS5 596 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CCNJLQ8IV13 435 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 CPXM2Q8N436 756 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 TDRD5Q8NAT2 981 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 GSDMBQ8TAX9 411 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 BPIFB1Q8TDL5 484 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 FGF14Q92915 247 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 PAFAH2Q99487 392 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 DDX50Q9BQ39 737 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 LINC00597Q9H2U6 94 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 SP110Q9HB58 689 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 ZFP14Q9HCL3 533 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 RBM22Q9NW64 420 aaKnown RBP eCLIP14.43□□□□□ -0.1
CUX1-209ENST00000487284 TBK1Q9UHD2 729 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 AAR2Q9Y312 384 aaKnown RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 ACTL7BQ9Y614 415 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 MAD1L1Q9Y6D9 718 aa14.43□□□□□ -0.1
CUX1-209ENST00000487284 ZFP37Q9Y6Q3 630 aaPredicted RBP14.43□□□□□ -0.1
CUX1-209ENST00000487284 J3KR12 359 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 CLDN11O75508 207 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 ANXA9O76027 345 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 RENBPP51606 427 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 KBTBD12Q3ZCT8 623 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 TTC39BQ5VTQ0 682 aaPredicted RBP14.42□□□□□ -0.1
CUX1-209ENST00000487284 NAPEPLDQ6IQ20 393 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 ADGRD1Q6QNK2 874 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 PARM1Q6UWI2 310 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 VITQ6UXI7 678 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 CYS1Q717R9 158 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 TRABD2AQ86V40 505 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 TEX26Q8N6G2 289 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 OR52K1Q8NGK4 314 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 MAGEH1Q9H213 219 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 OBP2AQ9NY56 170 aa14.42□□□□□ -0.1
CUX1-209ENST00000487284 COL6A3P12111 3177 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 A0A1B0GVM2 712 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 TCAF2A6NFQ2 919 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 AP3B1O00203 1094 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 PRAMEF11O60813 436 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 USP12O75317 370 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 PGAM1P18669 254 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 GEMP55040 296 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 SESN2P58004 480 aaPredicted RBP14.41□□□□□ -0.1
CUX1-209ENST00000487284 OLIG2Q13516 323 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 TPGS1Q6ZTW0 290 aa14.41□□□□□ -0.1
CUX1-209ENST00000487284 LINC00523Q86TU6 105 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms