RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TMEM86AQ8N2M4 240 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 KBTBD8Q8NFY9 601 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PTPRHQ9HD43 1115 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 EXOSC4Q9NPD3 245 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 RPRD1BQ9NQG5 326 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 KLK14Q9P0G3 267 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF221Q9UK13 617 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TLL2Q9Y6L7 1015 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 H0YC42 278 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FSCN2O14926 492 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 UBDO15205 165 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FANCGO15287 622 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CILPO75339 1184 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 GUCY1B2O75343 617 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ODC1P11926 461 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ACO1P21399 889 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PSMB9P28065 219 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FLT3P36888 993 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CDH8P55286 799 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PDK1Q15118 436 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FAM83EQ2M2I3 478 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 N4BP2L1Q5TBK1 243 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 GPR107Q5VW38 600 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 C17orf99Q6UX52 265 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PID1Q7Z2X4 250 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 POLNQ7Z5Q5 900 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 IFNEQ86WN2 208 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 POU5F2Q8N7G0 328 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 POC5Q8NA72 575 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 LEMD2Q8NC56 503 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CD99L2Q8TCZ2 262 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FAM172AQ8WUF8 416 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ELMO3Q96BJ8 720 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MTERF3Q96E29 417 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SNX27Q96L92 541 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FAM118BQ9BPY3 351 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 DHX35Q9H5Z1 703 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ACSS3Q9H6R3 686 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 VRTNQ9H8Y1 702 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MAGEE1Q9HCI5 957 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 NCKIPSDQ9NZQ3 722 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TSPAN16Q9UKR8 245 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 COG5Q9UP83 839 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CNTN6Q9UQ52 1028 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PCDHB7Q9Y5E2 793 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CYB561D2O14569 222 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TPST1O60507 370 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 FBXO21O94952 628 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 MGAT5Q09328 741 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TRAP1Q12931 704 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 POLD3Q15054 466 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RBBP7Q16576 425 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TMTC4Q5T4D3 741 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 AGAP9Q5VTM2 703 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 DPY19L2P1Q6NXN4 242 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ENKURQ8TC29 256 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 USP13Q92995 863 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TBCBQ99426 244 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 KCTD14Q9BQ13 255 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 C17orf80Q9BSJ5 609 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SYT11Q9BT88 431 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 MINDY3Q9H8M7 445 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 HPS4Q9NQG7 708 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 FAM49BQ9NUQ9 324 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 PRKAG3Q9UGI9 489 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 GIT1Q9Y2X7 761 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SYNJ2BP-COX16A0A087WUM0 186 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 CLDN25C9JDP6 229 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 M0QX08 132 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 MRASO14807 208 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ALOX15BO15296 676 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 FAM163BP0C2L3 166 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 XPAP23025 273 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 NFKBIAP25963 317 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 FAAP100Q0VG06 881 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 LSAMPQ13449 338 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 PERM1Q5SV97 790 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 DENND1BQ6P3S1 775 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 LAYNQ6UX15 382 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RINLQ6ZS11 566 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 CHSY1Q86X52 802 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SLC22A9Q8IVM8 553 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 C12orf50Q8NA57 414 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 DDX1Q92499 740 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 PTCD3Q96EY7 689 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ELMO2Q96JJ3 720 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SYT15Q9BQS2 421 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 UGT2B28Q9BY64 529 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ETNK2Q9NVF9 386 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 COX16Q9P0S2 106 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 FETUBQ9UGM5 382 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 PADI4Q9UM07 663 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 NENFQ9UMX5 172 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 MAGED2Q9UNF1 606 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 CHKBQ9Y259 395 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 C3orf70A6NLC5 250 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RNF103O00237 685 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RGS5O15539 181 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TREHO43280 583 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 DCXO43602 365 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms