RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 NRG1Q02297 640 aaPredicted RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 DNAJC3Q13217 504 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 TCP11X2Q5H9J9 407 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 FBXL19Q6PCT2 694 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 TFAP2DQ7Z6R9 452 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 NOP9Q86U38 636 aaKnown RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 DCP2Q8IU60 420 aaKnown RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 PCDH20Q8N6Y1 951 aaKnown RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 IFT43Q96FT9 208 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 NUP62CLQ9H1M0 184 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 ZNF212Q9UDV6 495 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 A0A1W2PQU0 124 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 FAM149AA5PLN7 773 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 THEGLP0DJG4 465 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 RRM1P23921 792 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 SERPINH1P50454 418 aaKnown RBP18.82■□□□□ 0.6
CLN3-241ENST00000635861 COL28A1Q2UY09 1125 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 ZNF284Q2VY69 593 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 ARL13BQ3SXY8 428 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 POM121L1PQ3SYA9 428 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 HS1BP3Q53T59 392 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 TAF3Q5VWG9 929 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 PDZD3Q86UT5 571 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 PLPP6Q8IY26 295 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 RFFLQ8WZ73 363 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 ARRDC3Q96B67 414 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 NRSN2Q9GZP1 204 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 KLHL11Q9NVR0 708 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 MPP6Q9NZW5 540 aa18.82■□□□□ 0.6
CLN3-241ENST00000635861 SHROOM3Q8TF72 1996 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 K7ERQ8 282 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 CBX4O00257 560 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 SMAD6O43541 496 aaKnown RBP18.81■□□□□ 0.6
CLN3-241ENST00000635861 SRGAP2O75044 1071 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 NEK3P51956 506 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 GEMIN4P57678 1058 aaKnown RBP18.81■□□□□ 0.6
CLN3-241ENST00000635861 ZNF211Q13398 564 aaPredicted RBP18.81■□□□□ 0.6
CLN3-241ENST00000635861 PROX2Q3B8N5 592 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 ARTNQ5T4W7 220 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 KIAA1161Q6NSJ0 714 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 C19orf48Q6RUI8 117 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 ISG20Q96AZ6 181 aaKnown RBP18.81■□□□□ 0.6
CLN3-241ENST00000635861 CFAP57Q96MR6 1250 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 GBP4Q96PP9 640 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 ATP13A1Q9HD20 1204 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 SNX10Q9Y5X0 201 aa18.81■□□□□ 0.6
CLN3-241ENST00000635861 GOLGA8SH3BPF8 625 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 SLC31A1O15431 190 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 ZMPSTE24O75844 475 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 CYP1A1P04798 512 aaPredicted RBP18.8■□□□□ 0.6
CLN3-241ENST00000635861 TPM2P07951 284 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 MMEP08473 750 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 ITGB7P26010 798 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 MAPKAPK2P49137 400 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 E2F1Q01094 437 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 GNA12Q03113 381 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 TMEM259Q4ZIN3 620 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 HSP90AA4PQ58FG1 418 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 ARSIQ5FYB1 569 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 HES3Q5TGS1 186 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 TRNP1Q6NT89 227 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 TRIM72Q6ZMU5 477 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 DPY19L3Q6ZPD9 716 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 ABI3BPQ7Z7G0 1075 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 FAM131BQ86XD5 332 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 CHST14Q8NCH0 376 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 OR7D4Q8NG98 312 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 LRIG1Q96JA1 1093 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 HEPHQ9BQS7 1158 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 SAMSN1Q9NSI8 373 aaKnown RBP18.8■□□□□ 0.6
CLN3-241ENST00000635861 HS3ST3A1Q9Y663 406 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 WASF2Q9Y6W5 498 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 BPTFQ12830 3046 aa18.8■□□□□ 0.6
CLN3-241ENST00000635861 RIOK3O14730 519 aaKnown RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 AP1G1O43747 822 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 ZNF821O75541 412 aaPredicted RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 LEFTY1O75610 366 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 PCDH8O95206 1070 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 MMP8P22894 467 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 SDC4P31431 198 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 L1CAMP32004 1257 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 RPS21P63220 83 aaKnown RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 CDR2Q01850 454 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 RTP5Q14D33 572 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 CARD16Q5EG05 197 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 NAA35Q5VZE5 725 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 LINGO4Q6UY18 593 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 STRADAQ7RTN6 431 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 MARCH9Q86YJ5 346 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 OR4C6Q8NH72 309 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 ENOX1Q8TC92 643 aaKnown RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 GRIN3AQ8TCU5 1115 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 CPA5Q8WXQ8 436 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 SPON2Q9BUD6 331 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 OSBPL2Q9H1P3 480 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 GANQ9H2C0 597 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 METTL5Q9NRN9 209 aaKnown RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 TMPRSS4Q9NRS4 437 aa18.79■□□□□ 0.6
CLN3-241ENST00000635861 NOCTQ9UK39 431 aaKnown RBP18.79■□□□□ 0.6
CLN3-241ENST00000635861 A6NNZ2 444 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms