RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CD151P48509 253 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 POLE2P56282 527 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 RCN2Q14257 317 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 AADACL2Q6P093 401 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 DOK6Q6PKX4 331 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 CCDC185Q8N715 623 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 OR7D4Q8NG98 312 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 ZSCAN18Q8TBC5 510 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 IL22Q9GZX6 179 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 KATNBL1Q9H079 304 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 MLXIPLQ9NP71 852 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 WWOXQ9NZC7 414 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.98□□□□□ -0.81
LIG3-216ENST00000593099 AJAP1Q9UKB5 411 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 BAG5Q9UL15 447 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3DA0A087WVF3 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3IA0A087WXS9 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3EA0A087X179 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3KA0A087X1G2 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3FA6NER0 549 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3LB9A6J9 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 FSCN2O14926 492 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 MTA2O94776 668 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 VAPBO95292 243 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3HP0C7X1 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PGAM1P18669 254 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 HALP42357 657 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 DYNC1I2Q13409 638 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 PLCL1Q15111 1095 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 SYPL2Q5VXT5 272 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3GQ6DHY5 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3CQ6IPX1 549 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TBC1D3Q8IZP1 549 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 BORCS6Q96GS4 357 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PANX3Q96QZ0 392 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PABPC3Q9H361 631 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 ETNK1Q9HBU6 452 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 VPS45Q9NRW7 570 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 CNPP09543 421 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 MYL2P10916 166 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 HTR1BP28222 390 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 ELK3P41970 407 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 MAGEA10P43363 369 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 GPR1P46091 355 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 NDST2P52849 883 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 TPD52P55327 224 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 TRADDQ15628 312 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 SPANXN3Q5MJ09 141 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PDPK2PQ6A1A2 396 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 FAM124AQ86V42 546 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 LRRC39Q96DD0 335 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 P2RY11Q96G91 374 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 CASD1Q96PB1 797 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 EVA1BQ9NVM1 165 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 BAIAP2L1Q9UHR4 511 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 APOBEC2Q9Y235 224 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 TULP2O00295 520 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 FGF1P05230 155 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 APOA4P06727 396 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 ITGAVP06756 1048 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PECAM1P16284 738 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 HLA-DPA1P20036 260 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 HIST2H2ACQ16777 129 aaPredicted RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 PCID2Q5JVF3 399 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 HABP4Q5JVS0 413 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 HIST2H2AA3Q6FI13 130 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 FAM47EQ6ZV65 393 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 DDIASQ8IXT1 998 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 C4orf33Q8N1A6 199 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 STK40Q8N2I9 435 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 OR10T2Q8NGX3 314 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 GLOD4Q9HC38 313 aa9.98□□□□□ -0.81
LIG3-216ENST00000593099 PIH1D1Q9NWS0 290 aaKnown RBP9.98□□□□□ -0.81
LIG3-216ENST00000593099 C1orf232A0A0U1RR37 186 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 UGT2B4P06133 528 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ABL2P42684 1182 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 SERPINB8P50452 374 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 DSG1Q02413 1049 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 OTOAQ7RTW8 1153 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 GDPD5Q8WTR4 605 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 TMEM209Q96SK2 561 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CFHR5Q9BXR6 569 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 HAPLN2Q9GZV7 340 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 HSD3B7Q9H2F3 369 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 DMGDHQ9UI17 866 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 APPL1Q9UKG1 709 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CLCA2Q9UQC9 943 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 E2F8A0AVK6 867 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 WDR27A2RRH5 827 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 TMEM189-UBE2V1I3L0A0 370 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CHADO15335 359 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 H2AFYO75367 372 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 LCA5LO95447 670 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CYP11A1P05108 521 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ADH5P11766 374 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 PABPC1P11940 636 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 RPL22P35268 128 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 WNT3AP56704 352 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 RAET1GQ6H3X3 334 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 KCNMB4Q86W47 210 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms