RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SH3BGRLO75368 114 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 ELFN1P0C7U0 828 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 TFE3P19532 575 aaPredicted RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 CSKP41240 450 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PPP3CCP48454 512 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CDK18Q07002 472 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 INCA1Q0VD86 236 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CNGA3Q16281 694 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 FAM46CQ5VWP2 391 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CREG2Q8IUH2 290 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 BBS7Q8IWZ6 715 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 DEFB123Q8N688 67 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PLD5Q8N7P1 536 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS39-205ENST00000562258 KBTBD7Q8WVZ9 684 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 C8orf48Q96LL4 319 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PITPNM3Q9BZ71 974 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 FBXW11Q9UKB1 542 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 INVSQ9Y283 1065 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SYNDIG1LA6NDD5 238 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 VPS26AO75436 327 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SNRPAP09012 282 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 ERVK-10P10266 1014 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PABPC1P11940 636 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 MZF1P28698 734 aaPredicted RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 MTHFRP42898 656 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CSHL1Q14406 222 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SCARA3Q6AZY7 606 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 C4orf22Q6V702 233 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 LRRN4CLQ8ND94 238 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 TBL1YQ9BQ87 522 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 LEFTY2O00292 366 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 ZNF189O75820 626 aaPredicted RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 FMO4P31512 558 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 L1CAMP32004 1257 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PTPN9P43378 593 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 HDAC4P56524 1084 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 XRCC4Q13426 336 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PDGFRLQ15198 375 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 POLNQ7Z5Q5 900 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CRLF3Q8IUI8 442 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PSTKQ8IV42 348 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 CACNA2D3Q8IZS8 1091 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SNX31Q8N9S9 440 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 TMEM159Q96B96 161 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SKA1Q96BD8 255 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 BORCS6Q96GS4 357 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 VAT1Q99536 393 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CDC42EP4Q9H3Q1 356 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 FAM96AQ9H5X1 160 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 GPAMQ9HCL2 828 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CD84Q9UIB8 345 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CA14Q9ULX7 337 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 ASCC3Q8N3C0 2202 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 HEPACAM2A8MVW5 462 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CNTN5O94779 1100 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 ALDH1A2O94788 518 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PRLRP16471 622 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 HMOX2P30519 316 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 PARP6Q2NL67 630 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 SYTL1Q8IYJ3 562 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 LMO3Q8TAP4 145 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 TSPAN17Q96FV3 270 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CLSTN3Q9BQT9 956 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 TSSK1BQ9BXA7 367 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CACYBPQ9HB71 228 aaKnown RBP9.38□□□□□ -0.91
VPS39-205ENST00000562258 CASS4Q9NQ75 786 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 ETNK2Q9NVF9 386 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CACNA2D2Q9NY47 1150 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 GPSM3Q9Y4H4 160 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CUL9Q8IWT3 2517 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 SUPT7LO94864 414 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 OAZ2O95190 189 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 SLC25A14O95258 325 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 CYP2A6P11509 494 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 ADH5P11766 374 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 EPB42P16452 691 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 IL1R2P27930 398 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 ACVRL1P37023 503 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 ZNF135P52742 658 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 AAK1Q2M2I8 961 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MBLAC2Q68D91 279 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 CRTC3Q6UUV7 619 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 FAM151BQ6UXP7 276 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 Q6ZVU0 165 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 OOSP2Q86WS3 158 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 WDR75Q8IWA0 830 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 TRIM42Q8IWZ5 723 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MMGT1Q8N4V1 131 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 TSEN2Q8NCE0 465 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 PCDH19Q8TAB3 1148 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 SORCS1Q8WY21 1168 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 KLHL32Q96NJ5 620 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 ELAC2Q9BQ52 826 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 SLC39A8Q9C0K1 460 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 SFXN1Q9H9B4 322 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 WWOXQ9NZC7 414 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 STK38LQ9Y2H1 464 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 PAPPA2Q9BXP8 1791 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 IFRD1O00458 451 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms