RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 A0A1W2PQ67 120 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CALCAP01258 141 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 SLC4A1P02730 911 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 EPCAMP16422 314 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF45Q02386 682 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF284Q2VY69 593 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 POLR1BQ9H9Y6 1135 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 NYAP2Q9P242 653 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 SAE1Q9UBE0 346 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 SNX6Q9UNH7 406 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PDCD5O14737 125 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 DNAJB6O75190 326 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PRKD3O94806 890 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CHRNGP07510 517 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CASP1P29466 404 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 AKR1D1P51857 326 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 FOXM1Q08050 763 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 LIPMQ5VYY2 423 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF767PQ75MW2 155 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 RANBP3Q9H6Z4 567 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 NECTIN3Q9NQS3 549 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CRLS1Q9UJA2 301 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 USP31Q70CQ4 1352 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TPD52L2O43399 206 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 FLT3P36888 993 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TRPV5Q9NQA5 729 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 GRIP1Q9Y3R0 1128 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 AP1M2Q9Y6Q5 423 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 FAM153BP0C7A2 387 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TGFB3P10600 412 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TRAM1Q15629 374 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 EGFL6Q8IUX8 553 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PCIF1Q9H4Z3 704 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS53-204ENST00000437048 VPS4AQ9UN37 437 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CAPN6Q9Y6Q1 641 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZCCHC11Q5TAX3 1644 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 SMCO3A2RU48 225 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 NR2C1P13056 603 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 GPR15P49685 360 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 NDUFA9Q16795 377 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 AGXT2Q9BYV1 514 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 MTIF3Q9H2K0 278 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 CITO14578 2027 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CSDE1O75534 798 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 PTPN7P35236 360 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 SLC11A2P49281 568 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 NOTUMQ6P988 496 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 RBM44Q6ZP01 1051 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 CHST15Q7LFX5 561 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 IL17REQ8NFR9 667 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PHF10Q8WUB8 498 aaKnown RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 C1orf21Q9H246 121 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PRKAG2Q9UGJ0 569 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 IKZF3Q9UKT9 509 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 AGAP1Q9UPQ3 857 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 BCORL1Q5H9F3 1711 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 AP3D1O14617 1153 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 PON3Q15166 354 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 SLFN11Q7Z7L1 901 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CFAP206Q8IYR0 622 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ETNPPLQ8TBG4 499 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 SH3RF3Q8TEJ3 882 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 OXCT2Q9BYC2 517 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 ANKRA2Q9H9E1 313 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CD93Q9NPY3 652 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF335Q9H4Z2 1342 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 PRAMEF22A3QJZ6 481 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 RAB19A4D1S5 217 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF682O95780 498 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 ABL2P42684 1182 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 LHX1P48742 406 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 GMPSP49915 693 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 ZNF358Q9NW07 568 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TRIM43BA6NCK2 446 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SCELO95171 688 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 AP1S1P61966 158 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TRIM32Q13049 653 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GLRA4Q5JXX5 417 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CCNYL2Q5T2Q4 361 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GTPBP2Q9BX10 602 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 GPR63Q9BZJ6 419 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PCSK1NQ9UHG2 260 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GMPPBQ9Y5P6 360 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PTPRUQ92729 1446 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TFECO14948 347 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 ASLP04424 464 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TFE3P19532 575 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 PTP4A2Q12974 167 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 NKX1-1Q15270 411 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 NR6A1Q15406 480 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ZPBP2Q6X784 338 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GSDMCQ9BYG8 508 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 HIPK3Q9H422 1215 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CCDC177Q9NQR7 707 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 SUCOQ9UBS9 1254 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 PRR12Q9ULL5 1215 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 USP18Q9UMW8 372 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GIT1Q9Y2X7 761 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 FAM86C2PA6NEL3 165 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms