RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SPINT1O43278 529 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 GCATO75600 419 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 PCDH8O95206 1070 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 MOCS2O96007 188 aaPredicted RBP14.93□□□□□ -0.02
CLN3-249ENST00000636685 CTSLP07711 333 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 LCP1P13796 627 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 ITIH1P19827 911 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 GCLMP48507 274 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 C1orf61Q13536 156 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 E2F4Q16254 413 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 FAM173BQ6P4H8 233 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 CNNM4Q6P4Q7 775 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 KYAT3Q6YP21 454 aaKnown RBP14.93□□□□□ -0.02
CLN3-249ENST00000636685 UNC13DQ70J99 1090 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 DTX1Q86Y01 620 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 RBFAQ8N0V3 343 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 GOLGA5Q8TBA6 731 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 UBA3Q8TBC4 463 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 GLMNQ92990 594 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 TMX3Q96JJ7 454 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 SLC12A9Q9BXP2 914 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 ZNF71Q9NQZ8 489 aaPredicted RBP14.93□□□□□ -0.02
CLN3-249ENST00000636685 CISHQ9NSE2 258 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 IPO11Q9UI26 975 aaKnown RBP14.93□□□□□ -0.02
CLN3-249ENST00000636685 XPO7Q9UIA9 1087 aaKnown RBP14.93□□□□□ -0.02
CLN3-249ENST00000636685 RABGEF1Q9UJ41 708 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 TSPAN16Q9UKR8 245 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 PADI4Q9UM07 663 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 SMC3Q9UQE7 1217 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 LOXL2Q9Y4K0 774 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 PCDHB11Q9Y5F2 797 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 LRBAP50851 2863 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 D6RAR5 112 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 RNF103O00237 685 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 PIK3R2O00459 728 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 KPNA3O00505 521 aaPredicted RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 ALOX15BO15296 676 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 ATP9BO43861 1147 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 ETV5P41161 510 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 ADKP55263 362 aaKnown RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 AMPD3Q01432 767 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 SULT2A1Q06520 285 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 EIF2B5Q13144 721 aaKnown RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 PDE1CQ14123 709 aaPredicted RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 FGL2Q14314 439 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 DLG2Q15700 870 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 TMEM259Q4ZIN3 620 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 CIR1Q86X95 450 aaPredicted RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 SLC9A9Q8IVB4 645 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 FAM174AQ8TBP5 190 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 JPH3Q8WXH2 748 aaPredicted RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 GFM1Q96RP9 751 aaKnown RBP14.92□□□□□ -0.02
CLN3-249ENST00000636685 C7orf25Q9BPX7 421 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 BLZF1Q9H2G9 400 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 MMRN2Q9H8L6 949 aa14.92□□□□□ -0.02
CLN3-249ENST00000636685 MED13Q9UHV7 2174 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 TMX2-CTNND1H3BSU7 103 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 SPTLC2O15270 562 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 GABBR2O75899 941 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 TRIM49P0CI25 452 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 TRIM49CP0CI26 452 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 CCL7P80098 99 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 PPP3CAQ08209 521 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 BST2Q10589 180 aaKnown RBP14.91□□□□□ -0.02
CLN3-249ENST00000636685 PRRT3Q5FWE3 981 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 CEP135Q66GS9 1140 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 RAP1GAP2Q684P5 730 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 SDR16C5Q8N3Y7 309 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 ERCC4Q92889 916 aaPredicted RBP14.91□□□□□ -0.02
CLN3-249ENST00000636685 USP7Q93009 1102 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 CCDC74AQ96AQ1 378 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 MIB2Q96AX9 1013 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 DHX58Q96C10 678 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 CNGB3Q9NQW8 809 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 SPASTQ9UBP0 616 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 FBN2P35556 2912 aa14.91□□□□□ -0.02
CLN3-249ENST00000636685 A0A1W2PQM1 296 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 VPS37CA5D8V6 355 aaPredicted RBP14.9□□□□□ -0.02
CLN3-249ENST00000636685 PAK4O96013 591 aaPredicted RBP14.9□□□□□ -0.02
CLN3-249ENST00000636685 NR3C1P04150 777 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 RPLP0P05388 317 aaKnown RBP14.9□□□□□ -0.02
CLN3-249ENST00000636685 TACR2P21452 398 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 CCKBRP32239 447 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 RABIFP47224 123 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 RGS7P49802 495 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 VAMP7P51809 220 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 MAPK10P53779 464 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 SLC12A1Q13621 1099 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 CHSY1Q86X52 802 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 SCML4Q8N228 414 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 CLEC4CQ8WTT0 213 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 KCTD13Q8WZ19 329 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 SLC39A13Q96H72 371 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 SLC17A9Q9BYT1 436 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 CPEB1Q9BZB8 566 aaKnown RBP14.9□□□□□ -0.02
CLN3-249ENST00000636685 GULP1Q9UBP9 304 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 HESX1Q9UBX0 185 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 SLC25A13Q9UJS0 675 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 TUBD1Q9UJT1 453 aa14.9□□□□□ -0.02
CLN3-249ENST00000636685 PNMA8BQ9ULN7 279 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms