RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF821O75541 412 aaPredicted RBP15.38■□□□□ 0.05
VPS39-210ENST00000568357 IL1BP01584 269 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CFIP05156 583 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 MYBL1P10243 752 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 HNRNPH3P31942 346 aaKnown RBP15.38■□□□□ 0.05
VPS39-210ENST00000568357 ACVRL1P37023 503 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 PSMD8P48556 350 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 SEMA3BQ13214 749 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 DUOXA1Q1HG43 343 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 EFHC2Q5JST6 749 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 SPECC1LQ69YQ0 1117 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 USP30Q70CQ3 517 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CEP76Q8TAP6 659 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 EDEM2Q9BV94 578 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 ACE2Q9BYF1 805 aaPredicted RBP15.38■□□□□ 0.05
VPS39-210ENST00000568357 RETREG1Q9H6L5 497 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 SGK2Q9HBY8 427 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CAPN10Q9HC96 672 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 ATP13A1Q9HD20 1204 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 GPATCH2LQ9NWQ4 482 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 PPM1HQ9ULR3 514 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 SLC6A14Q9UN76 642 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 NCKAP1Q9Y2A7 1128 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 ACTL7AQ9Y615 435 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 PLXND1Q9Y4D7 1925 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 IGF2RP11717 2491 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 ANKRD11Q6UB99 2663 aaPredicted RBP15.38■□□□□ 0.05
VPS39-210ENST00000568357 MEI4A8MW99 385 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 CREB3O43889 395 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 BNIP3LO60238 219 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 RNASEH2AO75792 299 aaKnown RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 KCNK5O95279 499 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 SEMA4FO95754 770 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 CD160O95971 181 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 SERPINF2P08697 491 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 C5AR1P21730 350 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 MAPKAPK2P49137 400 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 AIF1P55008 147 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 ARF5P84085 180 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 CA9Q16790 459 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 VPS36Q86VN1 386 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 VSTM4Q8IW00 320 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 HDDC3Q8N4P3 179 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 KDF1Q8NAX2 398 aaPredicted RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 OR2A12Q8NGT7 310 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 C1orf216Q8TAB5 229 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 FNIP1Q8TF40 1166 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 ARHGEF2Q92974 986 aaKnown RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 TRIM11Q96F44 468 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 PEBP4Q96S96 227 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 OMDQ99983 421 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 TMEM121BQ9BXQ6 578 aaPredicted RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 NUSAP1Q9BXS6 441 aaKnown RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 THAP2Q9H0W7 228 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 PCED1AQ9H1Q7 454 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 NOL6Q9H6R4 1146 aaKnown RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 PCSK1NQ9UHG2 260 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 EIF2B4Q9UI10 523 aaKnown RBP15.37■□□□□ 0.05
VPS39-210ENST00000568357 SLCO1B1Q9Y6L6 691 aa15.37■□□□□ 0.05
VPS39-210ENST00000568357 RNF103O00237 685 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 PLK4O00444 970 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 ADH1BP00325 375 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 GOT1P17174 413 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 ENGP17813 658 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 SPINK2P20155 84 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 EPHB2P29323 1055 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 MIPP30301 263 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 EIF4A3P38919 411 aaKnown RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 GALCP54803 685 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 GFPT1Q06210 699 aaPredicted RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 SLC20A2Q08357 652 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 DAB2IPQ5VWQ8 1189 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 RETSATQ6NUM9 610 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 ALKBH5Q6P6C2 394 aaKnown RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 CYP4V2Q6ZWL3 525 aaPredicted RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 RTL3Q8N8U3 475 aaKnown RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 OR8K1Q8NGG5 319 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 OR8D1Q8WZ84 308 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 BIRC7Q96CA5 298 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 DNAJC7Q99615 494 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 MIR1-1HGQ9H1L0 117 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 MAGEH1Q9H213 219 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 TNKS2Q9H2K2 1166 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 MRPL47Q9HD33 250 aaKnown RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 NENFQ9UMX5 172 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.36■□□□□ 0.05
VPS39-210ENST00000568357 SCINQ9Y6U3 715 aa15.36■□□□□ 0.05
VPS39-210ENST00000568357 GON4LQ3T8J9 2241 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 FAM47DPA6NHR8 397 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 RAMP2O60895 175 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 RNF8O76064 485 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 FSBPO95073 299 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 CYP1A2P05177 515 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 IGHV4-34P06331 123 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 CTSLP07711 333 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 GNSP15586 552 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 DESP17661 470 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 DRD3P35462 400 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 MAPK8P45983 427 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms