RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CELF6	Q96J87	481 aa	Known RBP	21.19	■□□□□ 0.98
CD44-222	ENST00000526025	KCNH6	Q9H252	994 aa		21.19	■□□□□ 0.98
CD44-222	ENST00000526025	POLM	Q9NP87	494 aa	Predicted RBP	21.19	■□□□□ 0.98
CD44-222	ENST00000526025	ZDHHC4	Q9NPG8	344 aa		21.19	■□□□□ 0.98
CD44-222	ENST00000526025	SLCO3A1	Q9UIG8	710 aa		21.19	■□□□□ 0.98
CD44-222	ENST00000526025	MFHAS1	Q9Y4C4	1052 aa		21.19	■□□□□ 0.98
CD44-222	ENST00000526025	CCDC163	A0A0D9SF12	145 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	EDDM13	A0A1B0GTR0	161 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025		K7ESF4	209 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	MFSD11	O43934	449 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	SYNCRIP	O60506	623 aa	Known RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	PRAMEF11	O60813	436 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	SRC	P12931	536 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	TDGF1	P13385	188 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	MX2	P20592	715 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	GLDC	P23378	1020 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	MSN	P26038	577 aa	Known RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	PAPOLA	P51003	745 aa	Known RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	IL10RB	Q08334	325 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	ZNF528	Q3MIS6	628 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	HS1BP3	Q53T59	392 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	TMEM92	Q6UXU6	159 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	CCDC50	Q8IVM0	306 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	MAML2	Q8IZL2	1156 aa	Predicted RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	FATE1	Q969F0	183 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	RPL10L	Q96L21	214 aa	Known RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	ZNF599	Q96NL3	588 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	FAM126A	Q9BYI3	521 aa	Predicted RBP	21.18	■□□□□ 0.98
CD44-222	ENST00000526025	PDF	Q9HBH1	243 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	C2orf42	Q9NWW7	574 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	EBF1	Q9UH73	591 aa		21.18	■□□□□ 0.98
CD44-222	ENST00000526025	PLXND1	Q9Y4D7	1925 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	FANCM	Q8IYD8	2048 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	WASH3P	C4AMC7	463 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	ALDH1A2	O94788	518 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	APBB3	O95704	486 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	CD160	O95971	181 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	MT-CO1	P00395	513 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	EPHX1	P07099	455 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	TGM2	P21980	687 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	NR2C2	P49116	596 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	ZNF33A	Q06730	810 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	RFTN1	Q14699	578 aa	Predicted RBP	21.17	■□□□□ 0.98
CD44-222	ENST00000526025	RPS6KA1	Q15418	735 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	TMCO4	Q5TGY1	634 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	BZW1	Q7L1Q6	419 aa	Known RBP	21.17	■□□□□ 0.98
CD44-222	ENST00000526025	ZNF354C	Q86Y25	554 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	RFX6	Q8HWS3	928 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	PLPP6	Q8IY26	295 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	PCDH20	Q8N6Y1	951 aa	Known RBP	21.17	■□□□□ 0.98
CD44-222	ENST00000526025	ATP11C	Q8NB49	1132 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	TSTD1	Q8NFU3	115 aa		21.17	■□□□□ 0.98
CD44-222	ENST00000526025	IPO11	Q9UI26	975 aa	Known RBP	21.17	■□□□□ 0.98
CD44-222	ENST00000526025	PACSIN2	Q9UNF0	486 aa	Predicted RBP	21.17	■□□□□ 0.98
CD44-222	ENST00000526025	CACNA1H	O95180	2353 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	TTC34	A8MYJ7	566 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	DFFA	O00273	331 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	KIF5C	O60282	957 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	COL9A1	P20849	921 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	GARS	P41250	739 aa	Known RBP	21.16	■□□□□ 0.98
CD44-222	ENST00000526025	WAS	P42768	502 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	DLG2	Q15700	870 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	LINGO4	Q6UY18	593 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	BBS12	Q6ZW61	710 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	RASSF3	Q86WH2	238 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	ATPAF2	Q8N5M1	289 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	NELL1	Q92832	810 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	TSGA13	Q96PP4	275 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	OSBPL8	Q9BZF1	889 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	BRD8	Q9H0E9	1235 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	CARD9	Q9H257	536 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	SP110	Q9HB58	689 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	TRMT1	Q9NXH9	659 aa	Known RBP	21.16	■□□□□ 0.98
CD44-222	ENST00000526025	DTL	Q9NZJ0	730 aa		21.16	■□□□□ 0.98
CD44-222	ENST00000526025	ALOX15B	O15296	676 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	ZBTB24	O43167	697 aa	Predicted RBP	21.15	■□□□□ 0.98
CD44-222	ENST00000526025	MAFK	O60675	156 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	CST8	O60676	142 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	PYGM	P11217	842 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	HLA-E	P13747	358 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	NRL	P54845	237 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	GBE1	Q04446	702 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	ELAVL3	Q14576	367 aa	Known RBP	21.15	■□□□□ 0.98
CD44-222	ENST00000526025	C9orf64	Q5T6V5	341 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	KIAA1211L	Q6NV74	962 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	C22orf39	Q6P5X5	142 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	OR2T3	Q8NH03	318 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	PTPRN2	Q92932	1015 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	HDAC11	Q96DB2	347 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	CCDC114	Q96M63	670 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	OLFM3	Q96PB7	478 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	PRSS16	Q9NQE7	514 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	UBA2	Q9UBT2	640 aa	Predicted RBP	21.15	■□□□□ 0.98
CD44-222	ENST00000526025	JRKL	Q9Y4A0	524 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	EML5	Q05BV3	1969 aa		21.15	■□□□□ 0.98
CD44-222	ENST00000526025	USP27X	A6NNY8	438 aa		21.14	■□□□□ 0.97
CD44-222	ENST00000526025	KRT10	P13645	584 aa		21.14	■□□□□ 0.97
CD44-222	ENST00000526025	NUMB	P49757	651 aa		21.14	■□□□□ 0.97
CD44-222	ENST00000526025	PDK1	Q15118	436 aa		21.14	■□□□□ 0.97
CD44-222	ENST00000526025	ANGPT1	Q15389	498 aa		21.14	■□□□□ 0.97

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