RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NTAN1Q96AB6 310 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MFSD3Q96ES6 412 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NR1H4Q96RI1 486 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SLC9A7Q96T83 725 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 COG4Q9H9E3 785 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 BFARQ9NZS9 450 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CDH22Q9UJ99 828 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 A0A096LPK6 155 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 XPOTO43592 962 aaKnown RBP16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NCF2P19878 526 aaPredicted RBP16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 EPHB1P54762 984 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MAP3K7CLP57077 242 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SCAPQ12770 1279 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LAMB3Q13751 1172 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SNX17Q15036 470 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 THEMIS2Q5TEJ8 643 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MFSD14CQ5VZR4 134 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 WSCD1Q658N2 575 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DNAJB3Q8WWF6 145 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CMTM5Q96DZ9 223 aa16.39■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LOC100653049A0A140TA62 436 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GABRDO14764 452 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 KRT34O76011 436 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IGHA2P01877 340 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MPOP05164 745 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CSRP3P50461 194 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZBTB17Q13105 803 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HSP90AA5PQ58FG0 334 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SIX6OS1Q8N1H7 587 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SMG8Q8ND04 991 aaKnown RBP16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 URGCPQ8TCY9 931 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZFAND2BQ8WV99 257 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ULBP1Q9BZM6 244 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DNAI2Q9GZS0 605 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PIDD1Q9HB75 910 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MAN1C1Q9NR34 630 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 RAD54BQ9Y620 910 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CDH23Q9H251 3354 aa16.39■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 YJEFN3A6XGL0 299 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DCXO43602 365 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZMPSTE24O75844 475 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LTFP02788 710 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 C2P06681 752 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LYNP07948 512 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FAM163BP0C2L3 166 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 UBTFL6P0CB48 400 aaPredicted RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 COX4I1P13073 169 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CD1EP15812 388 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NUMBP49757 651 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PAPOLAP51003 745 aaKnown RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HNRNPDQ14103 355 aaKnown RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SDCCAG8Q86SQ7 713 aaPredicted RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DHDDSQ86SQ9 333 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DEFB107AQ8IZN7 70 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 EFCAB3Q8N7B9 438 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TSPAN18Q96SJ8 248 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 UNC93B1Q9H1C4 597 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GBA3Q9H227 469 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CYP4F11Q9HBI6 524 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CRTAC1Q9NQ79 661 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 FBXW11Q9UKB1 542 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ADAMTS6Q9UKP5 1117 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GNEQ9Y223 722 aaKnown RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IPPQ9Y573 584 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CDY2AQ9Y6F7 541 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CDY1Q9Y6F8 540 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TMEM114B3SHH9 223 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 C9IYK1 514 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HSPA4LO95757 839 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 F2P00734 622 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GLDCP23378 1020 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PRDX6P30041 224 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HCAR3P49019 387 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GJA9P57773 515 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DAOAP59103 153 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TPI1P60174 286 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ADAM17P78536 824 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 KLF10Q13118 480 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ITGA7Q13683 1181 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IQSEC1Q6DN90 963 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GPRIN1Q7Z2K8 1008 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DNAAF3Q8N9W5 541 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 OR52B2Q96RD2 323 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DDX50Q9BQ39 737 aaKnown RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 APOL2Q9BQE5 337 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GATA5Q9BWX5 397 aaPredicted RBP16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PPP1R12CQ9BZL4 782 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CHRAC1Q9NRG0 131 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZDHHC7Q9NXF8 308 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 POMPQ9Y244 141 aa16.38■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 E9PBE3 544 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PTGESO14684 152 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ATP9BO43861 1147 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 KLHL41O60662 606 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 NFKB1P19838 968 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LRPAP1P30533 357 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 AIF1P55008 147 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CUL3Q13618 768 aa16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 PDZD4Q76G19 769 aaPredicted RBP16.37■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CTU1Q7Z7A3 348 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms