RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 TAF11Q15544 211 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 MUM1Q2TAK8 710 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 RNF43Q68DV7 783 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 TRIM42Q8IWZ5 723 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 SNX31Q8N9S9 440 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 CENPIQ92674 756 aaPredicted RBP9.47□□□□□ -0.89
PRDM9-201ENST00000296682 ACBD6Q9BR61 282 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 OXCT2Q9BYC2 517 aaPredicted RBP9.47□□□□□ -0.89
PRDM9-201ENST00000296682 FRMD8Q9BZ67 464 aaPredicted RBP9.47□□□□□ -0.89
PRDM9-201ENST00000296682 C20orf27Q9GZN8 174 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 WDR55Q9H6Y2 383 aaPredicted RBP9.47□□□□□ -0.89
PRDM9-201ENST00000296682 SUDS3Q9H7L9 328 aaPredicted RBP9.47□□□□□ -0.89
PRDM9-201ENST00000296682 CATSPERBQ9H7T0 1116 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 ACTL7AQ9Y615 435 aa9.47□□□□□ -0.89
PRDM9-201ENST00000296682 OR51F1A6NGY5 319 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 HACD1B0YJ81 288 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 SPECC1L-ADORA2AF8WAN1 911 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 J3KR12 359 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 GABRDO14764 452 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 DCXO43602 365 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 KPNA6O60684 536 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 PDE5AO76074 875 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 FAM163BP0C2L3 166 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 ALADP13716 330 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 PMLP29590 882 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 USP46P62068 366 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 COG7P83436 770 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 SLC25A3Q00325 362 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 VARS2Q5ST30 1063 aaKnown RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 IFT43Q96FT9 208 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 WWP1Q9H0M0 922 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 PRDM5Q9NQX1 630 aaPredicted RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 TBC1D13Q9NVG8 400 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 MARCH2Q9P0N8 246 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 NEMP2A6NFY4 417 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 CIB2O75838 187 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 ALDOAP04075 364 aaKnown RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 GSTA2P09210 222 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 CKBP12277 381 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 CYBAP13498 195 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 SCNN1BP51168 640 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 CDH17Q12864 832 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 GRIK3Q13003 919 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 ZNF235Q14590 738 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 GRM3Q14832 879 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 OTUD1Q5VV17 481 aaPredicted RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 C1orf146Q5VVC0 180 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 DCLRE1AQ6PJP8 1040 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 DCP1BQ8IZD4 617 aaKnown RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 RSRC1Q96IZ7 334 aaKnown RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 VPS39Q96JC1 886 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 GPR62Q9BZJ7 368 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 ABCC13Q9NSE7 274 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 PTCH2Q9Y6C5 1203 aa9.46□□□□□ -0.89
PRDM9-201ENST00000296682 ZNF638Q14966 1978 aaKnown RBP9.46□□□□□ -0.89
PRDM9-201ENST00000296682 A0A0U1RQS6 177 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 TMEM88BA6NKF7 163 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 CCDC22O60826 627 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 TPSB2P20231 275 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 YWHAQP27348 245 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 NME5P56597 212 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 DSC2Q02487 901 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 ASPHQ12797 758 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 CUL3Q13618 768 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 KPNB1Q14974 876 aaKnown RBP9.46□□□□□ -0.9
PRDM9-201ENST00000296682 TPSAB1Q15661 275 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 ZRSR2Q15696 482 aaKnown RBP9.46□□□□□ -0.9
PRDM9-201ENST00000296682 HABP4Q5JVS0 413 aaKnown RBP9.46□□□□□ -0.9
PRDM9-201ENST00000296682 MARC1Q5VT66 337 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 CNTD1Q8N815 330 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 PSMG2Q969U7 264 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 LRRC39Q96DD0 335 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 NUF2Q9BZD4 464 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 BRD8Q9H0E9 1235 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 TRIM17Q9Y577 477 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 CDY1Q9Y6F8 540 aa9.46□□□□□ -0.9
PRDM9-201ENST00000296682 CBX4O00257 560 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 GLRA3O75311 464 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 GJB3O75712 270 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 BPGMP07738 259 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 MAGEA3P43357 314 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 NKX3-2P78367 333 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 CDK16Q00536 496 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 MAPRE1Q15691 268 aaKnown RBP9.45□□□□□ -0.9
PRDM9-201ENST00000296682 LAYNQ6UX15 382 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 SLC24A5Q71RS6 500 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 FAM13CQ8NE31 585 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 PPHLN1Q8NEY8 458 aaKnown RBP9.45□□□□□ -0.9
PRDM9-201ENST00000296682 RTP3Q9BQQ7 232 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 GKN1Q9NS71 199 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 NOP53Q9NZM5 478 aaKnown RBP9.45□□□□□ -0.9
PRDM9-201ENST00000296682 PCDHB5Q9Y5E4 795 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 KNL1Q8NG31 2342 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 KIAA1671Q9BY89 1806 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 E9PAM4 449 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 TXNDC9O14530 226 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 TOMM70O94826 608 aa9.45□□□□□ -0.9
PRDM9-201ENST00000296682 HNRNPLP14866 589 aaKnown RBP eCLIP9.45□□□□□ -0.9
PRDM9-201ENST00000296682 CD68P34810 354 aaPredicted RBP9.45□□□□□ -0.9
PRDM9-201ENST00000296682 CAP1Q01518 475 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms